scholarly journals Genetic variation and ecotypic differentiation in the wild rice species Oryza rufipogon. I. Population differentiation in life-history traits and isozymic loci.

1989 ◽  
Vol 64 (4) ◽  
pp. 259-271 ◽  
Author(s):  
Pascale BARBIER
Keyword(s):  
Genetic Variation ◽  
Life History ◽  
Population Differentiation ◽  
Wild Rice ◽  
Life History Traits ◽  
Oryza Rufipogon ◽  
Ecotypic Differentiation ◽  
Wild Rice Species ◽  
In The Wild

Life-history traits and geographical divergence in wild rice (Oryza rufipogon ) gene pool in Indochina Peninsula region

2015 ◽  
Vol 168 (1) ◽  
pp. 52-65 ◽  
Author(s):  
T. Pusadee ◽  
S. Jamjod ◽  
B. Rerkasem ◽  
B.A. Schaal
Keyword(s):  
Life History ◽  
Wild Rice ◽  
Gene Pool ◽  
Life History Traits ◽  
Oryza Rufipogon ◽  
Indochina Peninsula

Prey tell: what quillback rockfish early life history traits reveal about their survival in encounters with juvenile coho salmon

2020 ◽  
Vol 650 ◽  
pp. 7-18 ◽  
Author(s):  
HW Fennie ◽  
S Sponaugle ◽  
EA Daly ◽  
RD Brodeur
Keyword(s):  
Life History ◽  
Early Life ◽  
Life History Traits ◽  
Direct Evidence ◽  
Coho Salmon ◽  
Larval Fish ◽  
Early Life History ◽  
In The Wild ◽  
Otolith Microstructure Analysis ◽  
Pelagic Juvenile

Predation is a major source of mortality in the early life stages of fishes and a driving force in shaping fish populations. Theoretical, modeling, and laboratory studies have generated hypotheses that larval fish size, age, growth rate, and development rate affect their susceptibility to predation. Empirical data on predator selection in the wild are challenging to obtain, and most selective mortality studies must repeatedly sample populations of survivors to indirectly examine survivorship. While valuable on a population scale, these approaches can obscure selection by particular predators. In May 2018, along the coast of Washington, USA, we simultaneously collected juvenile quillback rockfish Sebastes maliger from both the environment and the stomachs of juvenile coho salmon Oncorhynchus kisutch. We used otolith microstructure analysis to examine whether juvenile coho salmon were age-, size-, and/or growth-selective predators of juvenile quillback rockfish. Our results indicate that juvenile rockfish consumed by salmon were significantly smaller, slower growing at capture, and younger than surviving (unconsumed) juvenile rockfish, providing direct evidence that juvenile coho salmon are selective predators on juvenile quillback rockfish. These differences in early life history traits between consumed and surviving rockfish are related to timing of parturition and the environmental conditions larval rockfish experienced, suggesting that maternal effects may substantially influence survival at this stage. Our results demonstrate that variability in timing of parturition and sea surface temperature leads to tradeoffs in early life history traits between growth in the larval stage and survival when encountering predators in the pelagic juvenile stage.

Identification and diversity of functional centromere satellites in the wild rice species Oryza brachyantha

2013 ◽  
Vol 21 (8) ◽  
pp. 725-737 ◽  
Author(s):  
Chuandeng Yi ◽  
Wenli Zhang ◽  
Xibin Dai ◽  
Xing Li ◽  
Zhiyun Gong ◽  
...  
Keyword(s):  
Wild Rice ◽  
Wild Rice Species ◽  
Oryza Brachyantha ◽  
In The Wild

Isolation and Identification of a Functional Centromere Element in the Wild Rice Species Oryza granulata with the GG Genome

2015 ◽  
Vol 42 (12) ◽  
pp. 699-702 ◽  
Author(s):  
Chuandeng Yi ◽  
Mingsen Wang ◽  
Wei Jiang ◽  
Derong Wang ◽  
Yong Zhou ◽  
...  
Keyword(s):  
Wild Rice ◽  
Isolation And Identification ◽  
Wild Rice Species ◽  
In The Wild ◽  
Oryza Granulata

scholarly journals Loci, genes, and gene networks associated with life history variation in a model ecological organism,Daphnia pulex(complex)

2018 ◽  
Author(s):  
Jacob W. Malcom ◽  
Thomas E. Juenger ◽  
Mathew A. Leibold
Keyword(s):  
Gene Expression ◽  
Genetic Variation ◽  
Life History ◽  
Molecular Basis ◽  
Life History Traits ◽  
Evolutionary Dynamics ◽  
Daphnia Pulex ◽  
Life History Trait ◽  
Life History Variation ◽  
Trait Variation

ABSTRACTBackgroundIdentifying the molecular basis of heritable variation provides insight into the underlying mechanisms generating phenotypic variation and the evolutionary history of organismal traits. Life history trait variation is of central importance to ecological and evolutionary dynamics, and contemporary genomic tools permit studies of the basis of this variation in non-genetic model organisms. We used high density genotyping, RNA-Seq gene expression assays, and detailed phenotyping of fourteen ecologically important life history traits in a wild-caught panel of 32Daphnia pulexclones to explore the molecular basis of trait variation in a model ecological species.ResultsWe found extensive phenotypic and a range of heritable genetic variation (~0 < H2< 0.44) in the panel, and accordingly identify 75-261 genes—organized in 3-6 coexpression modules—associated with genetic variation in each trait. The trait-related coexpression modules possess well-supported promoter motifs, and in conjunction with marker variation at trans- loci, suggest a relatively small number of important expression regulators. We further identify a candidate genetic network with SNPs in eight known transcriptional regulators, and dozens of differentially expressed genes, associated with life history variation. The gene-trait associations include numerous un-annotated genes, but also support several a priori hypotheses, including an ecdysone-induced protein and several Gene Ontology pathways.ConclusionThe genetic and gene expression architecture ofDaphnialife history traits is complex, and our results provide numerous candidate loci, genes, and coexpression modules to be tested as the molecular mechanisms that underlieDaphniaeco-evolutionary dynamics.

scholarly journals The Heritability of Behavior: A Meta-analysis

2019 ◽  
Vol 110 (4) ◽  
pp. 403-410 ◽  
Author(s):  
Ned A Dochtermann ◽  
Tori Schwab ◽  
Monica Anderson Berdal ◽  
Jeremy Dalos ◽  
Raphaël Royauté
Keyword(s):  
Genetic Variation ◽  
Life History ◽  
Life History Traits ◽  
Meta Analysis ◽  
Behavioral Responses ◽  
Relative Effect ◽  
Biologically Relevant ◽  
Sources Of Variation ◽  
High Heritability ◽  
Relevant Factors

AbstractThe contribution of genetic variation to phenotypes is a central factor in whether and how populations respond to selection. The most common approach to estimating these influences is via the calculation of heritabilities, which summarize the contribution of genetic variation to phenotypic variation. Heritabilities also indicate the relative effect of genetic variation on phenotypes versus that of environmental sources of variation. For labile traits like behavioral responses, life history traits, and physiological responses, estimation of heritabilities is important as these traits are strongly influenced by the environment. Thus, knowing whether or not genetic variation is present within populations is necessary to understand whether or not these populations can evolve in response to selection. Here we report the results of a meta-analysis summarizing what we currently know about the heritability of behavior. Using phylogenetically controlled methods we assessed the average heritability of behavior (0.235)—which is similar to that reported in previous analyses of physiological and life history traits—and examined differences among taxa, behavioral classifications, and other biologically relevant factors. We found that there was considerable variation among behaviors as to how heritable they were, with migratory behaviors being the most heritable. Interestingly, we found no effect of phylogeny on estimates of heritability. These results suggest, first, that behavior may not be particularly unique in the degree to which it is influenced by factors other than genetics and, second, that those factors influencing whether a behavioral trait will have low or high heritability require further consideration.

scholarly journals Enhancement of Rice Leaf Photosynthesis by Crossing between Cultivated Rice,Oryza sativaand Wild Rice Species,Oryza rufipogon

2004 ◽  
Vol 7 (3) ◽  
pp. 252-259 ◽  
Author(s):  
Chisato Masumoto ◽  
Takashige Ishii ◽  
Sono Kataoka ◽  
Tomoko Hatanaka ◽  
Naotsugu Uchida
Keyword(s):  
Wild Rice ◽  
Oryza Rufipogon ◽  
Leaf Photosynthesis ◽  
Cultivated Rice ◽  
Rice Leaf ◽  
Wild Rice Species
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