scholarly journals Correcting for Sequencing Error in Maximum Likelihood Phylogeny Inference

2014 ◽  
Vol 4 (12) ◽  
pp. 2545-2552 ◽  
Author(s):  
Mary K. Kuhner ◽  
James McGill
2020 ◽  
Vol 190 (2) ◽  
pp. 709-736
Author(s):  
Jae-Cheon Sohn ◽  
Shigeki Kobayashi ◽  
Yutaka Yoshiyasu

Abstract A northward trans-Wallacean radiation is demonstrated for Chrysorthenches, a member of the Orthenches group. Here we review Chrysorthenches and allied genera resulting in a generic transfer of Diathryptica callibrya to Chrysorthenches and two new congeners: C. muraseaeSohn & Kobayashisp. nov. from Japan and C. smaragdinaSohnsp. nov. from Thailand. We review morphological characters of Chrysorthenches and allied genera, and find polyphyly of Diathryptica and the association of the Orthenches-group with Glyphipterigidae. These findings were supported in a maximum likelihood phylogeny of DNA barcodes from ten yponomeutoids. We analysed 30 morphological characters for 12 species of Chrysorthenches, plus one outgroup, via a cladistic approach. The resulting cladogram redefined two pre-existing Chrysorthenches species-groups and identified one novel lineage: the C. callibrya species-group. We review the host associations between Chrysorthenches and Podocarpaceae, based on mapping the working phylogenies. Our review suggests that ancestral Chrysorthenches colonized Podocarpus and later shifted to other podocarp genera. Biogeographical patterns of Chrysorthenches show that they evolved long after the Podocarpaceae radiation. Disjunctive trans-Wallacean distribution of the C. callibrya species-group is possibly related to the tracking of their host-plants and the complicated geological history of the island-arc system connecting Australia and East Asia.


Author(s):  
Savithri Purayannur ◽  
Michael J Munster ◽  
Matthew A Bertone ◽  
Lina Quesada-Ocampo

In this brief, we report the observation of downy mildew caused by Peronospora chenopodii-ambrosioidis on epazote (Dysphania ambrosioides) in North Carolina, USA. We performed morphological characterization of the sporangia and sporangiophores for identification. We also confirmed the identity of the pathogen by performing an alignment and generating a Maximum Likelihood phylogeny of the concatenated internal transcribed spacer (ITS) region and cytochrome c oxidase subunit I (cox1) sequences.


Sign in / Sign up

Export Citation Format

Share Document