scholarly journals Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte PathogenTrichophyton rubrum

Genetics ◽  
2018 ◽  
Vol 208 (4) ◽  
pp. 1657-1669 ◽  
Author(s):  
Gabriela F. Persinoti ◽  
Diego A. Martinez ◽  
Wenjun Li ◽  
Aylin Döğen ◽  
R. Blake Billmyre ◽  
...  
Keyword(s):  
Population Structure ◽  
Genome Analysis ◽  
Whole Genome ◽  
Whole Genome Analysis ◽  
Clonal Population ◽  
Clonal Population Structure

scholarly journals PyClone-VI: Scalable inference of clonal population structures using whole genome data

2020 ◽  
Author(s):  
Sierra Gillis ◽  
Andrew Roth
Keyword(s):  
Population Structure ◽  
Statistical Method ◽  
Whole Genome ◽  
Computationally Efficient ◽  
Clonal Population ◽  
Link Type ◽  
Genome Data ◽  
Population Structures ◽  
Scalable Inference ◽  
Clonal Population Structure

AbstractWe describe PyClone-VI, a computationally efficient Bayesian statistical method for inferring the clonal population structure of cancers. Our proposed method is 10-100x times faster than existing methods, while providing results which are as accurate. We demonstrate the utility of the method by analyzing data from 1717 patients from PCAWG study and 100 patients from the TRACERx study. Software implementing our method is freely available https://github.com/Roth-Lab/pyclone-vi.

scholarly journals Whole-genome analysis uncovers loss of blaZ associated to carriage isolates belonging to MRSA clone ST5-VI in Cape Verde

2021 ◽  
Author(s):  
Magdalena Wysocka ◽  
Tamar Monteiro ◽  
Carine de Pina ◽  
Deisy Gonçalves ◽  
Sandrine de Pina ◽  
...  
Keyword(s):  
Genome Analysis ◽  
Cape Verde ◽  
Whole Genome ◽  
Whole Genome Analysis

Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation

2007 ◽  
Vol 9 (12) ◽  
pp. 2993-3007 ◽  
Author(s):  
Lisa Y. Stein ◽  
Daniel J. Arp ◽  
Paul M. Berube ◽  
Patrick S. G. Chain ◽  
Loren Hauser ◽  
...  
Keyword(s):  
Genome Analysis ◽  
Whole Genome ◽  
Whole Genome Analysis ◽  
Niche Adaptation ◽  
Ammonia Oxidizing Bacterium

scholarly journals "Clonal" population structure of the malaria agent Plasmodium falciparum in high-infection regions

2005 ◽  
Vol 102 (48) ◽  
pp. 17388-17393 ◽  
Author(s):  
F. G. Razakandrainibe ◽  
P. Durand ◽  
J. C. Koella ◽  
T. De Meeus ◽  
F. Rousset ◽  
...  
Keyword(s):  
Plasmodium Falciparum ◽  
Population Structure ◽  
Clonal Population ◽  
High Infection ◽  
Clonal Population Structure

scholarly journals Whole-Genome Analysis of Oryza sativa Reveals Similar Architecture of Two-Component Signaling Machinery with Arabidopsis

2006 ◽  
Vol 142 (2) ◽  
pp. 380-397 ◽  
Author(s):  
Ashwani Pareek ◽  
Anupama Singh ◽  
Manoj Kumar ◽  
Hemant R. Kushwaha ◽  
Andrew M. Lynn ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Genome Analysis ◽  
Whole Genome ◽  
Whole Genome Analysis ◽  
Two Component
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