Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v1 (protocols.io.brdnm25e)

protocols.io ◽

10.17504/protocols.io.brdnm25e ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 2: Multi-modal 3D image reconstruction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v1 (protocols.io.brw5m7g6)

protocols.io ◽

10.17504/protocols.io.brw5m7g6 ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Image Reconstruction ◽

Mass Spectrometry Imaging ◽

Use Case ◽

3D Image ◽

Imaging Data ◽

3D Image Reconstruction ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v2 (protocols.io.brv2m68e)

protocols.io ◽

10.17504/protocols.io.brv2m68e ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v1 (protocols.io.brw2m7ge)

protocols.io ◽

10.17504/protocols.io.brw2m7ge ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v2 (protocols.io.bvq5n5y6)

protocols.io ◽

10.17504/protocols.io.bvq5n5y6 ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 1: Dimensionality reduction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v1 (protocols.io.brw4m7gw)

protocols.io ◽

10.17504/protocols.io.brw4m7gw ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Dimensionality Reduction ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v2 (protocols.io.brv5m686)

protocols.io ◽

10.17504/protocols.io.brv5m686 ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 2: Multi-modal 3D image reconstruction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v2 (protocols.io.bvq8n5zw)

protocols.io ◽

10.17504/protocols.io.bvq8n5zw ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Image Reconstruction ◽

Mass Spectrometry Imaging ◽

Use Case ◽

3D Image ◽

Imaging Data ◽

3D Image Reconstruction ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Supporting protocol for use-case 1: Dimensionality reduction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v2

protocols.io ◽

10.17504/protocols.io.bwybpfsn ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Dimensionality Reduction ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

2D And 3D ◽

Memory Efficient

Download Full-text

Memory Efficient Principal Component Analysis for the Dimensionality Reduction of Large Mass Spectrometry Imaging Data Sets

Analytical Chemistry ◽

10.1021/ac302528v ◽

2013 ◽

Vol 85 (6) ◽

pp. 3071-3078 ◽

Author(s):

Alan M. Race ◽

Rory T. Steven ◽

Andrew D. Palmer ◽

Iain B. Styles ◽

Josephine Bunch

Keyword(s):

Mass Spectrometry ◽

Principal Component Analysis ◽

Dimensionality Reduction ◽

Mass Spectrometry Imaging ◽

Principal Component ◽

Component Analysis ◽

Data Sets ◽

Imaging Data ◽

Memory Efficient

Download Full-text

A Mathematical Comparison of Non‐negative Matrix Factorization‐Related Methods with Practical Implications for the Analysis of Mass Spectrometry Imaging Data

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.9181 ◽

2021 ◽

Author(s):

Melanie Nijs ◽

Tina Smets ◽

Etienne Waelkens ◽

Bart De Moor

Keyword(s):

Mass Spectrometry ◽

Matrix Factorization ◽

Mass Spectrometry Imaging ◽

Imaging Data ◽

Practical Implications ◽

Non Negative Matrix Factorization

Download Full-text