scholarly journals An End-to-End Progressive Multi-Task Learning Framework for Medical Named Entity Recognition and Normalization

2021 ◽  
Author(s):  
Baohang Zhou ◽  
Xiangrui Cai ◽  
Ying Zhang ◽  
Xiaojie Yuan
Keyword(s):  
Named Entity Recognition ◽  
Entity Recognition ◽  
Named Entity ◽  
Learning Framework ◽  
Task Learning ◽  
End To End

scholarly journals A Neural Multi-Task Learning Framework to Jointly Model Medical Named Entity Recognition and Normalization

2019 ◽  
Vol 33 ◽  
pp. 817-824 ◽  
Author(s):  
Sendong Zhao ◽  
Ting Liu ◽  
Sicheng Zhao ◽  
Fei Wang
Keyword(s):  
Named Entity Recognition ◽  
Model Performance ◽  
Joint Modeling ◽  
Entity Recognition ◽  
Named Entity ◽  
Learning Framework ◽  
Task Learning ◽  
Feedback Strategies ◽  
Model Recognition ◽  
Better Than

State-of-the-art studies have demonstrated the superiority of joint modeling over pipeline implementation for medical named entity recognition and normalization due to the mutual benefits between the two processes. To exploit these benefits in a more sophisticated way, we propose a novel deep neural multi-task learning framework with explicit feedback strategies to jointly model recognition and normalization. On one hand, our method benefits from the general representations of both tasks provided by multi-task learning. On the other hand, our method successfully converts hierarchical tasks into a parallel multi-task setting while maintaining the mutual supports between tasks. Both of these aspects improve the model performance. Experimental results demonstrate that our method performs significantly better than state-of-theart approaches on two publicly available medical literature datasets.

Dataset-aware multi-task learning approaches for biomedical named entity recognition

2020 ◽  
Vol 36 (15) ◽  
pp. 4331-4338
Author(s):  
Mei Zuo ◽  
Yang Zhang
Keyword(s):  
Neural Networks ◽  
Deep Neural Networks ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Quality Data ◽  
Supplementary Information ◽  
Named Entity ◽  
Task Learning ◽  
Biomedical Named Entity Recognition

Abstract Motivation Named entity recognition is a critical and fundamental task for biomedical text mining. Recently, researchers have focused on exploiting deep neural networks for biomedical named entity recognition (Bio-NER). The performance of deep neural networks on a single dataset mostly depends on data quality and quantity while high-quality data tends to be limited in size. To alleviate task-specific data limitation, some studies explored the multi-task learning (MTL) for Bio-NER and achieved state-of-the-art performance. However, these MTL methods did not make full use of information from various datasets of Bio-NER. The performance of state-of-the-art MTL method was significantly limited by the number of training datasets. Results We propose two dataset-aware MTL approaches for Bio-NER which jointly train all models for numerous Bio-NER datasets, thus each of these models could discriminatively exploit information from all of related training datasets. Both of our two approaches achieve substantially better performance compared with the state-of-the-art MTL method on 14 out of 15 Bio-NER datasets. Furthermore, we implemented our approaches by incorporating Bio-NER and biomedical part-of-speech (POS) tagging datasets. The results verify Bio-NER and POS can significantly enhance one another. Availability and implementation Our source code is available at https://github.com/zmmzGitHub/MTL-BC-LBC-BioNER and all datasets are publicly available at https://github.com/cambridgeltl/MTL-Bioinformatics-2016. Supplementary information Supplementary data are available at Bioinformatics online.

scholarly journals A Hierarchical Multi-Task Approach for Learning Embeddings from Semantic Tasks

2019 ◽  
Vol 33 ◽  
pp. 6949-6956 ◽  
Author(s):  
Victor Sanh ◽  
Thomas Wolf ◽  
Sebastian Ruder
Keyword(s):  
Language Processing ◽  
Semantic Information ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Relation Extraction ◽  
Entity Recognition ◽  
Inductive Bias ◽  
Named Entity ◽  
Task Learning ◽  
Hidden States

Much effort has been devoted to evaluate whether multi-task learning can be leveraged to learn rich representations that can be used in various Natural Language Processing (NLP) down-stream applications. However, there is still a lack of understanding of the settings in which multi-task learning has a significant effect. In this work, we introduce a hierarchical model trained in a multi-task learning setup on a set of carefully selected semantic tasks. The model is trained in a hierarchical fashion to introduce an inductive bias by supervising a set of low level tasks at the bottom layers of the model and more complex tasks at the top layers of the model. This model achieves state-of-the-art results on a number of tasks, namely Named Entity Recognition, Entity Mention Detection and Relation Extraction without hand-engineered features or external NLP tools like syntactic parsers. The hierarchical training supervision induces a set of shared semantic representations at lower layers of the model. We show that as we move from the bottom to the top layers of the model, the hidden states of the layers tend to represent more complex semantic information.

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