Structural and functional characterization of transcription factor binding sites: from bioinformatics to hormone biosensors

Plant Genetics, Genomics, Bioinformatics, and Biotechnology (PlantGen2021) ◽

10.18699/plantgen2021-038 ◽

2021 ◽

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Functional Characterization ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

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Functional characterization of transcription factor binding sites for HNF1-alpha, HNF3-beta (FOXA2), HNF4-alpha, Sp1 and Sp3 in the human prothrombin gene enhancer

Journal of Thrombosis and Haemostasis ◽

10.1046/j.1538-7836.2003.00393.x ◽

2003 ◽

Vol 1 (8) ◽

pp. 1688-1698 ◽

Author(s):

H. Ceelie ◽

C. C. Spaargaren-van Riel ◽

M. de Jong ◽

R. M. Bertina ◽

H. L. Vos

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Functional Characterization ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Gene Enhancer ◽

Prothrombin Gene ◽

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A Microfluidics-Based Platform For Identification and Detailed Characterization of Transcription Factor Binding Sites

Biophysical Journal ◽

10.1016/j.bpj.2009.12.396 ◽

2010 ◽

Vol 98 (3) ◽

pp. 70a

Author(s):

Polly M. Fordyce ◽

Doron Gerber ◽

Danh Tran ◽

Jiashun Zheng ◽

Hao Li ◽

...

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Detailed Characterization ◽

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Characterization of functional Sp1 transcription factor binding sites in the hepatitis B virus nucleocapsid promoter.

Journal of Virology ◽

10.1128/jvi.67.3.1472-1481.1993 ◽

1993 ◽

Vol 67 (3) ◽

pp. 1472-1481 ◽

Author(s):

P Zhang ◽

A K Raney ◽

A McLachlan

Keyword(s):

Transcription Factor ◽

Hepatitis B Virus ◽

Hepatitis B ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Sp1 Transcription Factor ◽

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Application of hidden Markov modeling to the characterization of transcription factor binding sites

Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences HICSS-94 ◽

10.1109/hicss.1994.323569 ◽

1994 ◽

Author(s):

Raman ◽

Overton

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Hidden Markov ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Markov Modeling ◽

Factor Binding ◽

Hidden Markov Modeling

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De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

Nature Biotechnology ◽

10.1038/nbt.1675 ◽

2010 ◽

Vol 28 (9) ◽

pp. 970-975 ◽

Author(s):

Polly M Fordyce ◽

Doron Gerber ◽

Danh Tran ◽

Jiashun Zheng ◽

Hao Li ◽

...

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

De Novo ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Biophysical Characterization ◽

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Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively

Physical Biology ◽

10.1088/1478-3975/12/5/056004 ◽

2015 ◽

Vol 12 (5) ◽

pp. 056004 ◽

Author(s):

Jacob Clifford ◽

Christoph Adami

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Information Theoretic ◽

Factor Binding ◽

Theoretic Characterization

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Faculty Opinions recommendation of Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1017662.206496 ◽

2004 ◽

Author(s):

Carlos F Barbas

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Noncoding Rnas ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Human Chromosomes ◽

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Faculty Opinions recommendation of Position specific variation in the rate of evolution in transcription factor binding sites.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1022543.258615 ◽

2004 ◽

Author(s):

Emmanouil Dermitzakis

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Rate Of Evolution ◽

Specific Variation

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Faculty Opinions recommendation of Divergence of transcription factor binding sites across related yeast species.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1089279.548953 ◽

2007 ◽

Author(s):

Emmanouil Dermitzakis

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Yeast Species ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

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Faculty Opinions recommendation of Genome-wide inference of natural selection on human transcription factor binding sites.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718018456.793479473 ◽

2013 ◽

Author(s):

Peter Keightley

Keyword(s):

Transcription Factor ◽

Natural Selection ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Genome Wide ◽

Human Transcription Factor

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