1P130 Prediction of IR spectra by normal mode analysis based on the Fragment Molecular Orbital (FMO) method(06.Electronic state,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Hiroya Nakata; Dmitri Fedorov; Satoshi Yokojima; Kazuo Kitaura; Shinichiro Nakamura

doi:10.2142/biophys.53.s127_3

1P130 Prediction of IR spectra by normal mode analysis based on the Fragment Molecular Orbital (FMO) method(06.Electronic state,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s127_3 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S127

Author(s):

Hiroya Nakata ◽

Dmitri Fedorov ◽

Satoshi Yokojima ◽

Kazuo Kitaura ◽

Shinichiro Nakamura

Keyword(s):

Ir Spectra ◽

Annual Meeting ◽

Electronic State ◽

Molecular Orbital ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Fragment Molecular Orbital ◽

Biophysical Society

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1P084 Modeling Motion Parts of Protein Based on Normal Mode Analysis(01E. Protein : Measurement & Analysis,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s154_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S154

Author(s):

Shinya Muraoka ◽

Yutaka Ueno

Keyword(s):

Annual Meeting ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Measurement Analysis ◽

Biophysical Society ◽

Protein Measurement

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1P-018 Structural analysis of ribosome based on the elastic network normal mode analysis and fitting technique(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s23_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S23

Author(s):

Atsushi Matsumoto ◽

Hisashi Ishida

Keyword(s):

Structural Analysis ◽

Annual Meeting ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Elastic Network ◽

Biophysical Society

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3D1148 Conformational change reproduced by a linear combination of displacement vectors obtained from normal mode analysis(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s119_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S119

Author(s):

Hiroshi Wako ◽

Shigeru Endo

Keyword(s):

Protein Structure ◽

Structure Function ◽

Linear Combination ◽

Annual Meeting ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

3D Protein Structure ◽

Displacement Vectors ◽

Biophysical Society

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1P072 Normal mode analysis of symmetric ring-shaped pentamer proteins(Protein:Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s31_6 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S31-S32

Author(s):

Hiroshi Wako ◽

Shigeru Endo

Keyword(s):

Annual Meeting ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Biophysical Society

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2P-047 Development of normal mode analysis databases PDBη and ProMode-oligomer(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s114_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S114

Author(s):

Hiroshi Wako ◽

Shigeru Endo

Keyword(s):

Annual Meeting ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Biophysical Society

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2P063 Contact number diffusion model for the normal mode analysis of protein structure(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s205_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S205

Author(s):

Bhaskar Dasgupta ◽

Kota Kasahara ◽

Narutoshi Kamiya ◽

Haruki Nakamura ◽

Akira Kinjo

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Diffusion Model ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Contact Number ◽

Protein Property ◽

Biophysical Society

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1P-083 Assessment of normal mode analysis with an elastic network model in dihedral angle space(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s34_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S34

Author(s):

Hiroshi Wako ◽

Shigeru Endo

Keyword(s):

Annual Meeting ◽

Dihedral Angle ◽

Normal Mode ◽

Network Model ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Elastic Network Model ◽

Elastic Network ◽

Biophysical Society ◽

Angle Space

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2B1436 A multi-body potential for normal mode analysis of protein structure(Proteins:Structure & Function II:Theory, Aggregation,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s40_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S40

Author(s):

Bhaskar Dasgupta ◽

Narutoshi Kamiya ◽

Haruki Nakamura ◽

Akira Kinjo

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Normal Mode ◽

Oral Presentation ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Biophysical Society ◽

Body Potential ◽

Multi Body

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2P029 Ab initio fragment molecular orbital calculations on specific interactions between butylcholinesterase and its inhibitors(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s199_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S199

Author(s):

Takeru Murakawa ◽

Tomoya Suzuki ◽

Tareq Khan ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Molecular Orbital ◽

Molecular Orbital Calculations ◽

Specific Interactions ◽

Fragment Molecular Orbital ◽

Biophysical Society

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2P140 Protein-Inhibitor Binding Enthalpy Calculation with ab initio Fragment Molecular Orbital Method(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s107_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S107

Author(s):

Hiroh Miyagawa ◽

Mayumi Endo

Keyword(s):

Ab Initio ◽

Annual Meeting ◽

Molecular Orbital ◽

Orbital Method ◽

Molecular Orbital Method ◽

Protein Inhibitor ◽

Inhibitor Binding ◽

Fragment Molecular Orbital ◽

Biophysical Society ◽

Binding Enthalpy

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