3P030 A Study for the Structural and Physicochemical Properties of Sociable Ligand-Binding Sites in Proteins(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Yoichi Murakami; Kengo Kinoshita

doi:10.2142/biophys.54.s253_6

3P030 A Study for the Structural and Physicochemical Properties of Sociable Ligand-Binding Sites in Proteins(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Yoichi Murakami ◽

Kengo Kinoshita

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Physicochemical Properties ◽

Structure Function ◽

Annual Meeting ◽

Binding Sites ◽

Ligand Binding Sites ◽

Biophysical Society

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3D0948 Application of CS-PCA (Chemical shift-principle component analysis) to the NMR data on a multiple-ligand-binding system(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s117_4 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S117

Author(s):

Kazumasa Sakurai ◽

Tsuyoshi Konuma ◽

Yuji Goto

Keyword(s):

Protein Structure ◽

Chemical Shift ◽

Ligand Binding ◽

Structure Function ◽

Annual Meeting ◽

Principle Component Analysis ◽

3D Protein Structure ◽

Nmr Data ◽

Biophysical Society ◽

Multiple Ligand

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2S4-3 Diversity and universality of protein ligand binding sites(2S4 What protein tertiary structure tells us,The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s10_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S10

Author(s):

Akira R. Kinjo

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Binding Sites ◽

Tertiary Structure ◽

Protein Tertiary Structure ◽

Ligand Binding Sites ◽

Biophysical Society

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2P022 Assignments of His residues in the Cu^-binding sites of the denatured apo-SOD1(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s198_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S198

Author(s):

Nobuhiro Fujimaki ◽

Takashi Miura ◽

Takakazu Nakabayashi

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Binding Sites ◽

Biophysical Society

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1E1624 Use of information about active sites and ligand-binding sites for the prediction of enzyme functions(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s41_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S41-S42

Author(s):

Chioko Nagao ◽

Kenji Mizuguchi

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Binding Sites ◽

Active Sites ◽

Genome Biology ◽

Ligand Binding Sites ◽

Biophysical Society ◽

Enzyme Functions

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2P032 The factors determining protein-ligand binding processes revealed by comparative coarse-grained simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Structure Function ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

Coarse Grained Simulations

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2P030 Ab initio molecular simulation for proposing novel peptide inhibitors blocking the ligand-binding to the receptor of cancer cell(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s199_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S199

Author(s):

Tatsuro Mizushima ◽

Ryushi Kadoya ◽

Tomoyo Kasumi ◽

Hiroshi Kobayashi ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Molecular Simulation ◽

Cancer Cell ◽

Peptide Inhibitors ◽

Biophysical Society

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2P029 An Exhaustive Search of Known and Unknown Protein-Ligand Binding Sites with A Fast Alignment-Free Method(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s87_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S87

Author(s):

Jun-ichi Ito ◽

Yasuo Tabei ◽

Kana Shimizu ◽

Kentaro Tomii ◽

Koji Tsuda

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Binding Sites ◽

Exhaustive Search ◽

Alignment Free ◽

Unknown Protein ◽

Ligand Binding Sites ◽

Biophysical Society

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2P-033 Ligand fragment assembly to predict ligand binding sites on protein three-dimensional structures(Protein:Structure & Function,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s111_4 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S111

Author(s):

Kota Kasahara ◽

Kengo Kinoshita ◽

Toshihisa Takagi

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Binding Sites ◽

Three Dimensional ◽

Fragment Assembly ◽

Ligand Binding Sites ◽

Biophysical Society

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2PT005 PoSSuM : a database for searching similar pairs of known and potential ligand-binding sites in proteins(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s120_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S120

Author(s):

Jun-ichi Ito ◽

Yasuo Tabei ◽

Kana Shimizu ◽

Koji Tsuda ◽

Kentaro Tomii

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Binding Sites ◽

Ligand Binding Sites ◽

Biophysical Society ◽

Potential Ligand

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3D1012 Protein-ligand binding simulation with a coarse-graind force field, MARTINI(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s117_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S117-S118

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Force Field ◽

Structure Function ◽

Annual Meeting ◽

3D Protein Structure ◽

Biophysical Society

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