scholarly journals Assessment of Genetic Diversity in Summer Squash Genotypes Using some Yield Traits and DNA Markers Analysis under Sinai Conditions

2021 ◽  
Vol 10 (1) ◽  
pp. 13-29
Author(s):  
Mohamed A. Abdein Diaa Abd El-Moneim
2018 ◽  
Vol 51 ◽  
pp. 185-192
Author(s):  
S. Kruhlyk ◽  
V. Dzitsiuk ◽  
V. Spyrydonov

Genetic variability of domestic dogs is a source for effective process of breed formation and creating unique gene complexes. In the world, for preservation of genetic resources of dogs, there are dog training associations which have great confidence: American Club Dog Breeders (AKC), the British Kennel Club (KC) and the Federation Cynologique Internationale (FCI), aimed at protecting breeding dogs, standards creation, registration of a breed, and issuance of accurate pedigrees. Evaluation of the genetic diversity of dog breeds is able to significantly complement and improve their breeding programs. Since breeds of dog differ in morphological and economic characteristics, the problem of finding of the breed features in the genome of animals is becoming more topical. From this point of view, French Bulldog is an interesting breed of dog (FRANC.BULLDOGGE, FCI standard number 101) which belongs by the classification of breeds, adopted in FCI, to the group IX – a dog-companion for health and fun, but to a subgroup of fighting dogs of a small format. French Bulldog breed has been researched slightly not only in Ukraine and also abroad, as the main work of all dog association is focused on solving theoretical and practical issues of breeding, keeping, feeding, veterinary protection and others. The study was conducted at Research Department of Molecular Diagnostic Tests of Ukrainian Laboratory of Quality and Safety of Agricultural Products. 33 animals of French Bulldog breed, admitted to use in dog breeding of Ukrainian Kennel Union (UKU), were involved for the genetic analysis using DNA markers. The materials of the research were buccal epithelial cells, selected before the morning feeding of animals by scraping mucous membrane of oral cavity with disposable, dry, sterile cotton swab. Genomic DNA was extracted using KIT-set of reagents for DNA isolation according to the manufacturer's instructions. PEZ1, PEZ3, PEZ6, PEZ8, FHC 2010, FHC 2054 markers, recommended by International Society for Animal Genetics (ISAG), ACN, КC and FCI, were used for research. As a result of research 25 alleles for all the loci were detected in the experimental sample of dogs. The average number of alleles at the locus Na, obtained by direct counting, was 4.16. The most polymorphic loci for this breed were PEZ6 and PEZ3 with 8 and 6 allelic variants. Monomorphic loci were PEZ8 and FHC 2054 which had 4 and 3 alleles and the lowest level of polymorphism was observed for PEZ 1 and FHC 2010 loci in which only 2 alleles were identified. On analyzing the molecular genetic characteristics of dogs of French Bulldog breed, we found a high variability of genotype on rare alleles, which included alleles: M, C, D, E, J, K, L, O, N and representing 60% of the total number of the identified alleles. C, D, E alleles for PEZ3 locus and O allele at PEZ6 locus are unique to the sampling of dogs because they are not repeated in other loci. Typical alleles: N, F, R, I, P, K, M are 40% of the total. But F, R alleles for PEZ3 locus and P allele for locus PEZ6 are not repeated either in standard allelic variants or in rare one, indicating a high information content of these alleles and loci to be used for further monitoring of allele pool, genetic certification and identification of dogs. Microsatellite DNA loci were analyzed as a result of investigations of French Bulldogs and the most informative: PEZ3, PEZ6 and PEZ8 were found, which have high efficiency in individual and breed certification of dogs due to high variability. These data allow further monitoring of the state of genetic diversity of the breed and the development of measures for improvement of breeding to preserve the structure of breeding material. The study of individual and population genetic variability is advisable to continue for breeding of French Bulldogs "in purity" and preserving valuable gene complexes. The results are the basis for further monitoring of the proposed informative panels of microsatellite DNA markers for genotyping dog of French Bulldog breed and their complex evaluation.


2008 ◽  
Vol 16 (2) ◽  
pp. 156
Author(s):  
Liao Xinjun ◽  
Chang Hong ◽  
Zhang Guixiang ◽  
Wang Donglei ◽  
Song Weitao ◽  
...  

2008 ◽  
Vol 86 (4) ◽  
pp. 1447-1462
Author(s):  
MOHAMED R. A. RAHOUMAH ◽  
ABDEL-NASER M. R. ABD EL-BARY ◽  
HESHAM M. E. HAMOUD ◽  
WALED M. B. YEHIA

2012 ◽  
Vol 44 (4) ◽  
pp. 588-596 ◽  
Author(s):  
Kang Hee Cho ◽  
◽  
Eun Young Nam ◽  
Kyung-Mi Bae ◽  
Il Sheob Shin ◽  
...  

2020 ◽  
Vol 24 (5) ◽  
pp. 474-480
Author(s):  
I. I. Suprun ◽  
S. A. Plugatar ◽  
I. V. Stepanov ◽  
T. S. Naumenko

In connection with the development of breeding and the creation of new plant varieties, the problem of their genotyping and identification is becoming increasingly important, therefore the use of molecular methods to identify genetic originality and assess plant genetic diversity appears to be relevant. As part of the work performed, informative ISSR and IRAP DNA markers promising for the study of genetic diversity of the Rosa L. genus were sought and applied to analysis of genetic relationships among 26 accessions of the genus Rosa L. from the gene pool collection of Nikita Botanical Gardens. They included 18 cultivated varieties and 8 accessions of wild species. The species sample included representatives of two subgenera, Rosa and Platyrhodon. The subgenus Platyrhodon was represented by one accession of the species R. roxburghii Tratt. Cultivated roses were represented by varieties of garden groups hybrid tea, floribunda, and grandiflora. The tested markers included 32 ISSRs and 13 IRAPs. Five ISSR markers (UBC 824, ASSR29, 3A21, UBC 864, and UBC 843) and three IRAPs (TDK 2R, Сass1, and Сass2) were chosen as the most promising. They were used for genotyping the studied sample of genotypes. In general, they appeared to be suitable for further use in studying the genetic diversity of the genus Rosa L. The numbers of polymorphic fragments ranged from 12 to 31, averaging 19.25 fragments per marker. For markers UBC 864 and UBC 843, unique fingerprints were identified in each accession studied. The genetic relationships of the studied species and varieties of roses analyzed by the UPGMA, PCoA, and Bayesian methods performed on the basis of IRAP and ISSR genotyping are consistent with their taxonomic positions. The genotype of the species R. roxburghii of the subgenus Platyrhodon was determined genetically as the most distant. According to clustering methods, the representative of the species R. bengalensis did not stand out from the group of cultivated varieties. When assessing the level of genetic similarity among the cultivated varieties of garden roses, the most genetically isolated varieties were ‘Flamingo’, ‘Queen Elizabeth’, and ‘Kordes Sondermeldung’; for most of the other varieties, groups of the greatest genetic similarity were identified. This assessment reflects general trends in phylogenetic relationships, both among the studied species of the genus and among cultivated varieties.


2018 ◽  
Vol 22 (1) ◽  
pp. 22
Author(s):  
Jayusman Jayusman ◽  
Muhammad Na’iem ◽  
Sapto Indrioko ◽  
Eko Bhakti Hardiyanto ◽  
ILG Nurcahyaningsih

Surian Toona sinensis Roem is one of the most widely planted species in Indonesia. This study aimed to estimate the genetic diversity between a number of surian populations in a progeny test using RAPD markers, with the goal of proposing management strategies for a surian breeding program. Ninety-six individual trees from 8 populations of surian were chosen as samples for analysis. Eleven polymorphic primers (OP-B3, OP-B4, OP-B10, OP-H3, OP-Y6, OP-Y7, OP-Y8, OP-Y10, OP-Y11, OP-Y14, and OP-06) producing reproducible bands were analyzed for the 96 trees, with six trees per family sampled. Data were analyzed using GenAlEx 6.3, NTSYS 2.02. The observed percentage of polymorphic loci ranged from 18.2% to 50%. The mean level of genetic diversity among the surian populations was considered to be moderate (He 0.304). Cluster analysis grouped the genotypes into two main clusters, at similarity levels of 0.68 and 0.46. The first two axes of the PCoA explained 46.16% and 25.54% of the total variation, respectively. The grouping of samples into clusters and subclusters did not correspond with family and their distances, but the grouping was in line with the genetic distances of the samples.


2021 ◽  
Author(s):  
◽  
Sebastián Ignacio Hernández Muñoz

<p>The school shark (Galeorhinus galeus) is a coastal bentho-pelagic species that is highly migratory and has a widespread distribution in temperate waters. This species matures late, has a relatively low fecundity and is slow growing, which makes it vulnerable to overfishing. They are commercially fished throughout their distribution, and some global stocks have been under pressure because of poor management. In Australia, longline and gillnet fisheries targeted pregnant females and juveniles around Victorian and Tasmanian nursery grounds, resulting in loss of historical inshore nursery habitat. School shark tagging programmes have reported migration between Australian and New Zealand stocks, but preliminary genetic studies have suggested that there are slight genetic differences between the stocks. Currently, the Australian and New Zealand school shark fisheries are assessed and managed as separate stocks. However, the question of whether this species is comprised of a single population or multiple sub-populations in the South Pacific remains unresolved. Given the commercial importance of the school shark fisheries and the concern about stock levels on the regional and trans-Tasman scales, knowledge of stock structure is essential for effective management. The aim of this thesis research was to determine the levels of genetic diversity and population structure of G. galeus in New Zealand and Australia, and compare these to a population in Chile, using mitochondrial DNA (mtDNA) sequencing and microsatellite DNA markers.  The DNA sequence of an 893 base pair region of the mtDNA control region (CR) was determined using 475 school shark samples and nine microsatellite DNA loci were genotyped in 239 individuals. Analyses of the data revealed strong evidence of genetic differentiation between G. galeus populations in Australasia and Chile, suggesting restricted gene flow among populations in the western and eastern areas of the Pacific Ocean. The FST values ranged from 0.188 to 0.300 for CR mtDNA, and 0.195 to 0.247 for microsatellite DNA in G. galeus. However, there was no evidence of stock differentiation among New Zealand/Australian sample sites for either mtDNA or microsatellite DNA data. These results support the model of a single panmictic stock across the Tasman Sea. The similarity of the results obtained from the maternally inherited mtDNA and biparental inherited microsatellite loci did not support the suggestion of sex-biased dispersal of G. galeus in the New Zealand/Australia region and it was concluded that females and males had similar patterns of dispersal.  Sharks can be either monogamous or polygamous, which is important when considering stock assessments and harvesting models. Multiple paternity has been reported in several shark species, however, the number of sires per litter varies considerably among species. An investigation of multiple paternity (MP) was conducted in G. galeus by assessing the levels of relatedness within progeny arrays using six polymorphic microsatellite DNA markers. Five “families” (mother and litters) were sampled from the North Island of New Zealand and a parentage analysis was conducted. The minimum number of males contributing to each progeny array was estimated by identifying the putative paternal alleles by allele counting and reconstructing multilocus genotypes method. The analysis showed the occurrence of genetic polyandry in G. galeus; two of five litters showing multiple sires involved in the progeny arrays (40%). The minimum number of sires per litter ranged from one to four. Although MP was only detected in two litters, this finding is consistent with the known reproductive characteristics of G. galeus. It can potentially store sperm for long periods of time and has a specific mating season when males and females typically mix on the edge of the continental shelf. Detecting MP within a litter has highlighted the importance of the post-copulatory selective processes in the G. galeus mating system, and this has implications for the management and conservation of genetic diversity.</p>


10.5109/9227 ◽  
2006 ◽  
Vol 51 (2) ◽  
pp. 181-187
Author(s):  
Ohm Mar Saw ◽  
Kazuyuki Doi ◽  
Aye Khin ◽  
Kenji Irie ◽  
Atsushi Yoshimura

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