A Markov Clustering Based Link Clustering Method to Identify Overlapping Modules in Protein-Protein Interaction Networks

Current Bioinformatics ◽

10.2174/1574893611666160125222017 ◽

2016 ◽

Vol 11 (2) ◽

pp. 221-233

Author(s):

Yan Wang ◽

Guishen Wang ◽

Di Meng ◽

Lan Huang ◽

Enrico Blanzieri ◽

...

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Clustering Method ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Protein complex identification through Markov clustering with firefly algorithm on dynamic protein–protein interaction networks

Information Sciences ◽

10.1016/j.ins.2015.09.028 ◽

2016 ◽

Vol 329 ◽

pp. 303-316 ◽

Author(s):

Xiujuan Lei ◽

Fei Wang ◽

Fang-Xiang Wu ◽

Aidong Zhang ◽

Witold Pedrycz

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm

2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2014.6999131 ◽

2014 ◽

Author(s):

Xiujuan Lei ◽

Fang-Xiang Wu ◽

Fei Wang ◽

Aidong Zhang

Keyword(s):

Protein Interaction ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Modular Decomposition ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2019.05.007 ◽

2019 ◽

Vol 17 ◽

pp. 805-811 ◽

Author(s):

Kumar Yugandhar ◽

Shagun Gupta ◽

Haiyuan Yu

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Better Link Prediction for Protein-Protein Interaction Networks

2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE) ◽

10.1109/bibe50027.2020.00017 ◽

2020 ◽

Author(s):

Ho Yin Yuen ◽

Jesper Jansson

Keyword(s):

Protein Interaction ◽

Link Prediction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein–protein interaction networks?

10.1002/pmic.200600455 ◽

2007 ◽

Vol 7 (6) ◽

pp. 961-964 ◽

Author(s):

Santiago Schnell ◽

Santo Fortunato ◽

Sourav Roy

Keyword(s):

Protein Interaction ◽

Intrinsic Disorder ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks

2013 IEEE 13th International Conference on Data Mining Workshops ◽

10.1109/icdmw.2013.126 ◽

2013 ◽

Author(s):

Rohan Khazanchi ◽

Kathryn Dempsey ◽

Ishwor Thapa ◽

Hesham Ali

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Establishing a protein-protein interaction networks for hypertrophic cardiomyopathy

Journal of Electrocardiology ◽

10.1016/j.jelectrocard.2010.12.114 ◽

2011 ◽

Vol 44 (2) ◽

pp. e47-e48

Author(s):

Chia-Chun Lu ◽

Ching-Shiun Chang ◽

Ming-Ju Tsai ◽

Yu-Shan Chen ◽

Yueh Chen ◽

...

Keyword(s):

Hypertrophic Cardiomyopathy ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Effect of Alternative Splicing on the Degree Centrality of Nodes in Protein–Protein Interaction Networks of Homo sapiens

Journal of Proteome Research ◽

10.1021/pr4000812 ◽

2013 ◽

Vol 12 (4) ◽

pp. 1980-1988 ◽

Author(s):

Anupam Sinha ◽

Hampapathalu Adimurthy Nagarajaram

Keyword(s):

Alternative Splicing ◽

Protein Interaction ◽

Homo Sapiens ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Degree Centrality ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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