scholarly journals The Ageing and Rejuvenation of Soft, Glassy  Complex Fluids

2021 ◽  
Author(s):  
◽  
Simon Andrew Rogers

<p>Suspensions of multiarm star polymers are studied as models for soft colloidal interactionsin colloidal glasses. Establishing a pre-shearing protocol which ensures a reproducible initial state (the "rejuvenation" of the system), we report here the stress evolution from startup for two different concentrations for a range of shear rates using conventional rheological techniques. We show the existence of critical shear rateswhich are functions of the concentration. When the suspensions are sheared at rates below the critical rates, the stress rises to a common value which is also a function of the concentration. The system thus evolves into a yield stress-like fluid. This behavior manifests itself as an evolution from a monotonic, slightly shear-thinning flow curve to a flow curve dominated by a stress plateau. Complementary to the controlled-rate measurements, stress-controlled measurementsshow that for a stress below the critical stress, the rate at which strain is acquired drops several orders of magnitude, providing evidence of a lower branch of the flow curve. In stress-controlled ageing experiments, the material recovers an increasing fraction of the strain acquired under stress with waiting time upon cessation of the (less than critical) stress. The freshly rejuvenated suspension recovers a mere 2%of the acquired strain, while for a waiting time of 104 s the material recovers 97% of the acquired strain. The material thus appears to evolve from a nearly ideal fluid to a nearly ideal solid. We relate this bulk evolution to spatially and temporally resolved Rheo-NMR velocity profiles which clearly show an evolution to a strongly shear-banded state. The velocity of the suspension in the lower shear band is below the uncertainty of the experiment. The growth of the (assumed) zero-shear band is well described by a Gompertz relation. The effects of shear-rate, temperature and waiting time on the Gompertzparameters are investigated. Phenomenological understanding is provided through a scalar model that describes the stress-dependent free-energy landscape. Using a dual-minimum free-energy landscape, the model is able to replicate the behaviour of the stress after startup in shearratecontrolled experiments, the flow curve and the velocity profiles across the gap of a Couette geometry. The Large-Amplitude-Oscillatory-Shear (LAOS) response is reported along with discussions of current LAOS analysis techniques. The stress response to LAOS of the star suspensions is well described in a Cox-Merz manner by a modified Cross model. The modified Cross model highlights an asymmetry in the LAOS response. This constitutes the first ever report of asymmetric LAOS responses. The asymmetry is followed as a function of time using two complementary scalar variables. A speculativeinterpretation is given to account for the evolution of the asymmetry.</p>

2021 ◽  
Author(s):  
◽  
Simon Andrew Rogers

<p>Suspensions of multiarm star polymers are studied as models for soft colloidal interactionsin colloidal glasses. Establishing a pre-shearing protocol which ensures a reproducible initial state (the "rejuvenation" of the system), we report here the stress evolution from startup for two different concentrations for a range of shear rates using conventional rheological techniques. We show the existence of critical shear rateswhich are functions of the concentration. When the suspensions are sheared at rates below the critical rates, the stress rises to a common value which is also a function of the concentration. The system thus evolves into a yield stress-like fluid. This behavior manifests itself as an evolution from a monotonic, slightly shear-thinning flow curve to a flow curve dominated by a stress plateau. Complementary to the controlled-rate measurements, stress-controlled measurementsshow that for a stress below the critical stress, the rate at which strain is acquired drops several orders of magnitude, providing evidence of a lower branch of the flow curve. In stress-controlled ageing experiments, the material recovers an increasing fraction of the strain acquired under stress with waiting time upon cessation of the (less than critical) stress. The freshly rejuvenated suspension recovers a mere 2%of the acquired strain, while for a waiting time of 104 s the material recovers 97% of the acquired strain. The material thus appears to evolve from a nearly ideal fluid to a nearly ideal solid. We relate this bulk evolution to spatially and temporally resolved Rheo-NMR velocity profiles which clearly show an evolution to a strongly shear-banded state. The velocity of the suspension in the lower shear band is below the uncertainty of the experiment. The growth of the (assumed) zero-shear band is well described by a Gompertz relation. The effects of shear-rate, temperature and waiting time on the Gompertzparameters are investigated. Phenomenological understanding is provided through a scalar model that describes the stress-dependent free-energy landscape. Using a dual-minimum free-energy landscape, the model is able to replicate the behaviour of the stress after startup in shearratecontrolled experiments, the flow curve and the velocity profiles across the gap of a Couette geometry. The Large-Amplitude-Oscillatory-Shear (LAOS) response is reported along with discussions of current LAOS analysis techniques. The stress response to LAOS of the star suspensions is well described in a Cox-Merz manner by a modified Cross model. The modified Cross model highlights an asymmetry in the LAOS response. This constitutes the first ever report of asymmetric LAOS responses. The asymmetry is followed as a function of time using two complementary scalar variables. A speculativeinterpretation is given to account for the evolution of the asymmetry.</p>


2019 ◽  
Author(s):  
Xiaohui Wang ◽  
Zhaoxi Sun

<p>Correct calculation of the variation of free energy upon base flipping is crucial in understanding the dynamics of DNA systems. The free energy landscape along the flipping pathway gives the thermodynamic stability and the flexibility of base-paired states. Although numerous free energy simulations are performed in the base flipping cases, no theoretically rigorous nonequilibrium techniques are devised and employed to investigate the thermodynamics of base flipping. In the current work, we report a general nonequilibrium stratification scheme for efficient calculation of the free energy landscape of base flipping in DNA duplex. We carefully monitor the convergence behavior of the equilibrium sampling based free energy simulation and the nonequilibrium stratification and determine the empirical length of time blocks required for converged sampling. Comparison between the performances of equilibrium umbrella sampling and nonequilibrium stratification is given. The results show that nonequilibrium free energy simulation is able to give similar accuracy and efficiency compared with the equilibrium enhanced sampling technique in the base flipping cases. We further test a convergence criterion we previously proposed and it comes out that the convergence behavior determined by this criterion agrees with those given by the time-invariant behavior of PMF and the nonlinear dependence of standard deviation on the sample size. </p>


ChemBioChem ◽  
2020 ◽  
Author(s):  
fareed aboul-ela ◽  
Abdallah S Abdelsatter ◽  
Youssef Mansour

Author(s):  
Nayara Dantas Coutinho ◽  
Hugo Gontijo Machado ◽  
Valter Henrique Carvalho-Silva ◽  
Wender A. Silva

Recent studies have assigned hydroxide elimination and C=C bond formation step in base-promoted aldol condensation the role of having a strong influence in the overall rate reaction, in contrast to...


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