scholarly journals It Pays to Be Lazy: Reusing Force Approximations to Compute Better Graph Layouts Faster

Author(s):  
Robert Gove

N-body simulations are common in applications ranging from physics simulations to computing graph layouts. The simulations are slow, but tree-based approximation algorithms like Barnes-Hut or the Fast Multipole Method dramatically improve performance. This paper proposes two new update schedules, uniform and dynamic, to make this type of approximation algorithm even faster by updating the approximation less often. An evaluation of these new schedules on computing graph layouts finds that the schedules typically decrease the running time by 9% to 18% for Barnes-Hut and 88% to 92% for the Fast Multipole Method. An experiment using 4 layout quality metrics on 50 graphs shows that the uniform schedule has similar or better graph layout quality compared to the standard Barnes-Hut or Fast Multipole Method algorithms.

2011 ◽  
Vol 230 (15) ◽  
pp. 5807-5821 ◽  
Author(s):  
Bo Zhang ◽  
Jingfang Huang ◽  
Nikos P. Pitsianis ◽  
Xiaobai Sun

1992 ◽  
Vol 278 ◽  
Author(s):  
Steven R. Lustig ◽  
J.J. Cristy ◽  
D.A. Pensak

AbstractThe fast multipole method (FMM) is implemented in canonical ensemble particle simulations to compute non-bonded interactions efficiently with explicit error control. Multipole and local expansions have been derived to implement the FMM efficiently in Cartesian coordinates for soft-sphere (inverse power law), Lennard- Jones, Morse and Yukawa potential functions. Significant reductions in execution times have been achieved with respect to the direct method. For a given number, N, of particles the execution times of the direct method scale asO(N2). The FMM execution times scale asO(N) on sequential workstations and vector processors and asymptotically0(logN) on massively parallel computers. Connection Machine CM-2 and WAVETRACER-DTC parallel FMM implementations execute faster than the Cray-YMP vectorized FMM for ensemble sizes larger than 28k and 35k, respectively. For 256k particle ensembles the CM-2 parallel FMM is 12 times faster than the Cray-YMP vectorized direct method and 2.2 times faster than the vectorized FMM. For 256k particle ensembles the WAVETRACER-DTC parallel FMM is 33 times faster than the Cray-YMP vectorized direct method.


Acta Numerica ◽  
1997 ◽  
Vol 6 ◽  
pp. 229-269 ◽  
Author(s):  
Leslie Greengard ◽  
Vladimir Rokhlin

We introduce a new version of the Fast Multipole Method for the evaluation of potential fields in three dimensions. It is based on a new diagonal form for translation operators and yields high accuracy at a reasonable cost.


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