scholarly journals Identification of differentially expressed cDNAs in Acanthamoeba culbertsoni after mouse brain passage

2006 ◽  
Vol 44 (1) ◽  
pp. 15 ◽  
Author(s):  
Kyu-Lee Han ◽  
Jongweon Lee ◽  
Don-Soo Kim ◽  
Soon-Jung Park ◽  
Kyung-il Im ◽  
...  
2009 ◽  
Vol 27 (5) ◽  
pp. 501-510 ◽  
Author(s):  
Uwe Ueberham ◽  
Peggy Lange ◽  
Elke Ueberham ◽  
Martina K. Brückner ◽  
Maike Hartlage‐Rübsamen ◽  
...  

2007 ◽  
Vol 352 (1) ◽  
pp. 55-60 ◽  
Author(s):  
Guillaume Luxardi ◽  
Antonella Galli ◽  
Sylvie Forlani ◽  
Kirstie Lawson ◽  
Flavio Maina ◽  
...  

2017 ◽  
Vol 55 (2) ◽  
pp. 1376-1386 ◽  
Author(s):  
Jorge Aragón ◽  
Mayram González-Reyes ◽  
José Romo-Yáñez ◽  
Ophélie Vacca ◽  
Guadalupe Aguilar-González ◽  
...  

2020 ◽  
Vol 34 (10) ◽  
pp. 13641-13653
Author(s):  
Anthony Guillemain ◽  
Yousra Laouarem ◽  
Laetitia Cobret ◽  
Dora Štefok ◽  
Wanyin Chen ◽  
...  

PROTEOMICS ◽  
2004 ◽  
Vol 4 (11) ◽  
pp. 3369-3375 ◽  
Author(s):  
Bokyung Park ◽  
Seul-Ki Jeong ◽  
Won-Suk Lee ◽  
Je Kyung Seong ◽  
Young-Ki Paik

Author(s):  
Zhixiang Lin ◽  
Mingfeng Li ◽  
Nenad Sestan ◽  
Hongyu Zhao

AbstractThe statistical methodology developed in this study was motivated by our interest in studying neurodevelopment using the mouse brain RNA-Seq data set, where gene expression levels were measured in multiple layers in the somatosensory cortex across time in both female and male samples. We aim to identify differentially expressed genes between adjacent time points, which may provide insights on the dynamics of brain development. Because of the extremely small sample size (one male and female at each time point), simple marginal analysis may be underpowered. We propose a Markov random field (MRF)-based approach to capitalizing on the between layers similarity, temporal dependency and the similarity between sex. The model parameters are estimated by an efficient EM algorithm with mean field-like approximation. Simulation results and real data analysis suggest that the proposed model improves the power to detect differentially expressed genes than simple marginal analysis. Our method also reveals biologically interesting results in the mouse brain RNA-Seq data set.


PLoS ONE ◽  
2012 ◽  
Vol 7 (7) ◽  
pp. e40028 ◽  
Author(s):  
Sachi Inukai ◽  
Alexandre de Lencastre ◽  
Michael Turner ◽  
Frank Slack

2001 ◽  
Vol 96 (1-2) ◽  
pp. 94-102 ◽  
Author(s):  
Dong Liang ◽  
Thomas N Seyfried

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