scholarly journals Mining Subsidence-Induced Microtopographic Effects Alter the Interaction of Soil Bacteria in the Sandy Pasture, China

2021 ◽  
Vol 9 ◽  
Author(s):  
Qi Zhang ◽  
Jing Ma ◽  
Yongjun Yang ◽  
Zhanbin Luo ◽  
Yifei Wang ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Living Environment ◽  
Soil Bacterial Community ◽  
Mining Subsidence ◽  
Community Diversity ◽  
Vegetation Coverage ◽  
Vegetation Degradation ◽  
Subsidence Area ◽  
Soil Bacterial ◽  
The Relationship

The microtopographic changes induced by coal mining subsidence caused a series of environmental problems such as soil erosion, and vegetation degradation in the mining area. However, the corresponding influence on surface vegetation and soil characteristic in different parts of the slope was completely different. To understand soil and vegetation degradation in coal mines and their future ecological restoration, it was crucial to investigate the origin. The relationship between soil microbial community diversity, structure, and taxa in the slope of subsidence area of different topographic locations in Daliuta coal mine, Shannxi, China, was determined by high throughput sequencing and molecular ecological network analysis. The relationship between the bacterial communities, environmental factors, and soil physicochemical properties was also investigated. We found a new topographic trait formed by surface subsidence to deteriorate the living environment of vegetation and the bacterial community. The vegetation coverage, soil water content, organic matter, and urease and dehydrogenase activities decreased significantly (p < 0.05). Although soil bacterial community diversity in the subsidence area did not differ significantly, the dominant taxa in different topographic locations varied. The molecular ecological networks representing bacterial community structure and function were also totally different. The networks in the middle and the top of the slope tend to be more complicated, and the interaction between species is obviously stronger than that of the bottom. However, the network in the bottom slope approached simplicity, and weak interaction, predominantly cooperative, was observed within and between modules. Meanwhile, the double stress of aridity and the lack of carbon source induced by subsidence also enhanced the capacity of the soil bacterial community to metabolize complex carbon sources at the bottom of the slope.

scholarly journals Molecular Biology-Based Analysis of the Interactive Effect of Nickel and Xanthates on Soil Bacterial Community Diversity and Structure

2019 ◽  
Vol 11 (14) ◽  
pp. 3888
Author(s):  
Prudence Bararunyeretse ◽  
Yan Zhang ◽  
Hongbing Ji
Keyword(s):  
Microbial Community ◽  
Molecular Biology ◽  
Bacterial Community ◽  
Soil Microbial Community ◽  
Bacterial Species ◽  
Interactive Effect ◽  
Soil Bacterial Community ◽  
Community Diversity ◽  
Soil Microbial ◽  
Soil Bacterial

Metals and mineral flotation collector’s toxicity to the soil living system greatly compromise the sustainability of mining and ore processing. Their effects on the soil microbial community, the most active soil component, remain less understood and addressed particularly with regards to xanthates and their combination with metals. This study analyzed the interactive effects of Ni and xanthates, potassium ethyl xanthate and sodium isopropyl xanthate, on the soil bacterial community through an efficient molecular biology-based technique, the Miseq (Illumina). Both soil microbial community diversity and structure were more affected by xanthates than by Ni. The five most dominant phyla, representing 96.31% of the whole bacterial community, comprised Proteobacteria (54.16%), Firmicutes (17.51%), Actinobacteria (15.59%), Acidobacteria (4.87%), and Chloroflexi (4.16%). Different soil treatments exhibited greater difference in the species abundance/dominance than in the species numbers. Proteobacteria was the most dominant in the presence of xanthates, individually or in mixtures with nickel, while Firmicutes exhibited its highest proportion in the Ni/xanthate-treated samples. The most abundant and proportionally different bacterial species between different treatments were presented. The most abundant bacterial strains identified should be explored more for their potential application in biomining and for the prediction and biologically-based treatment and remediation of Ni and xanthate-contaminated systems.

scholarly journals Soil Bacterial Diversity and Potential Functions Are Regulated by Long-Term Conservation Tillage and Straw Mulching

2020 ◽  
Vol 8 (6) ◽  
pp. 836
Author(s):  
Chang Liu ◽  
Lingling Li ◽  
Junhong Xie ◽  
Jeffrey A. Coulter ◽  
Renzhi Zhang ◽  
...  
Keyword(s):  
Information Processing ◽  
Bacterial Community ◽  
Crop Residue ◽  
Soil Bacterial Community ◽  
Community Diversity ◽  
No Tillage ◽  
Organic C ◽  
Soil Bacterial ◽  
Residue Retention

Soil physiochemical properties are regulated by cropping practices, but little is known about how tillage influences soil microbial community diversity and functions. Here, we assessed soil bacterial community assembly and functional profiles in relation to tillage. Soils, collected in 2018 from a 17-year field experiment in northwestern China, were analyzed using high-throughput sequencing and the PICRUSt approach. The taxonomic diversity of bacterial communities was dominated primarily by the phyla Proteobacteria (32–56%), Bacteroidetes (12–33%), and Actinobacteria (17–27%). Alpha diversity (Chao1, Shannon, Simpson, and operational taxonomic unit (OTU) richness) was highest under no-tillage with crop residue removed (NT). Crop residue retention on the soil surface (NTS) or incorporated into soil (TS) promoted the abundance of Proteobacteria by 16 to 74% as compared to conventional tillage (T). Tillage practices mainly affected the pathways of soil metabolism, genetic information processing, and environmental information processing. Soil organic C and NH4–N were the principal contributors to the diversity and composition of soil microbiota, whereas soil pH, total nitrogen, total P, and moisture had little effect. Our results suggest that long-term conservation practices with no-tillage and crop residue retention shape soil bacterial community composition through modifying soil physicochemical properties and promoting the metabolic function of soil microbiomes.

scholarly journals Soil bacterial community diversity and composition vary more with elevation than seasons in alpine habitats of western Himalaya

2020 ◽  
Author(s):  
Pamela Bhattacharya ◽  
Samrat Mondol ◽  
Gautam Talukdar ◽  
Gopal Singh Rawat
Keyword(s):  
Bacterial Community ◽  
High Altitude ◽  
Bacterial Communities ◽  
Western Himalaya ◽  
Soil Bacterial Community ◽  
Community Diversity ◽  
Soil Bacterial Communities ◽  
Alpine Habitats ◽  
Soil Bacterial ◽  
The Himalaya

AbstractSoil heterotrophic respiration-driven CO2 emissions, its impact on global warming and the mechanistic roles of soil bacterial communities in this process have been an area of active research. However, our knowledge regarding the effects of environmental changes on soil bacterial communities is limited. To this end, the climate-sensitive high-altitude alpine ecosystems offer ideal opportunities to investigate relationship between climate change and bacterial communities. While data from several high-altitude mountain regions suggest that local environment factors and geological patterns govern bacterial communities, no information is available from the Himalaya. Here we provide baseline information on seasonal soil bacterial community diversity and composition along a 3200-4000 m elevation gradient covering four alpine habitats (subalpine forest, alpine scrub, alpine meadow and moraine) in Gangotri National Park, western Himalaya. Bacterial metabarcoding data from 36 field-collected samples showed no elevation trend in the bacterial richness and a non-monotonous decrease in their diversity. Further, their community diversity and composition varied significantly among habitats along elevation but were stable seasonally within each habitat. The richness was primarily influenced by soil inorganic carbon (SOC) and total nitrogen (TN), whereas temperature, SOC and TN affected diversity and composition patterns. Given the importance of the Himalaya in the context of global carbon cycle this information will help in accurate modeling of climate adaptation scenarios of bacterial niches and their downstream impacts towards climate warming.

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