Faculty Opinions recommendation of Virus-induced gene silencing as a tool for functional genomics in a legume species.

Author(s):  
Andy Maule
2004 ◽  
Vol 40 (4) ◽  
pp. 622-631 ◽  
Author(s):  
Gabriela D. Constantin ◽  
Britta N. Krath ◽  
Stuart A. MacFarlane ◽  
Mogens Nicolaisen ◽  
Ida Elisabeth Johansen ◽  
...  

2013 ◽  
Vol 40 (12) ◽  
pp. 1234 ◽  
Author(s):  
Stéphanie Pflieger ◽  
Manon M. S. Richard ◽  
Sophie Blanchet ◽  
Chouaib Meziadi ◽  
Valérie Geffroy

Legume species are among the most important crops worldwide. In recent years, six legume genomes have been completely sequenced, and there is now an urgent need for reverse-genetics tools to validate genes affecting yield and product quality. As most legumes are recalcitrant to stable genetic transformation, virus-induced gene silencing (VIGS) appears to be a powerful alternative technology for determining the function of unknown genes. VIGS technology is based on the property of plant viruses to trigger a defence mechanism related to post-transcriptional gene silencing (PTGS). Infection by a recombinant virus carrying a fragment of a plant target gene will induce homology-dependent silencing of the endogenous target gene. Several VIGS systems have been developed for legume species since 2004, including those based on Bean pod mottle virus, Pea early browning virus, and Apple latent spherical virus, and used in reverse-genetics studies of a wide variety of plant biological processes. In this work, we give an overview of the VIGS systems available for legumes, and present their successful applications in functional genomics studies. We also discuss the limitations of these VIGS systems and the future challenges to be faced in order to use VIGS to its full potential in legume species.


2019 ◽  
Vol 20 (16) ◽  
pp. 3976 ◽  
Author(s):  
Hongqiu Zeng ◽  
Yanwei Xie ◽  
Guoyin Liu ◽  
Yunxie Wei ◽  
Wei Hu ◽  
...  

Agrobacterium-mediated transient expression and virus-induced gene silencing (VIGS) are very useful in functional genomics in plants. However, whether these methods are effective in cassava (Manihot esculenta), one of the most important tropical crops, remains elusive. In this study, we used green fluorescent protein (GFP) and β-glucuronidase (GUS) as reporter genes in a transient expression assay. GFP or GUS could be detected in the infiltrated leaves at 2 days postinfiltration (dpi) and were evidenced by visual GFP and GUS assays, reverse-transcription PCR, and Western blot. In addition, phytoene desaturase (PDS) was used to show the silencing effect in a VIGS system. Both Agrobacterium GV3101 and AGL-1 with tobacco rattle virus (TRV)-MePDS-infiltrated distal leaves showed an albino phenotype at 20 dpi; in particular, the AGL-1-infiltrated plants showed an obvious albino area in the most distal leaves. Moreover, the silencing effect was validated by molecular identification. Notably, compared with the obvious cassava mosaic disease symptom infiltrated by African-cassava-mosaic-virus-based VIGS systems in previous studies, TRV-based VIGS-system-infiltrated cassava plants did not show obvious virus-induced disease symptoms, suggesting a significant advantage. Taken together, these methods could promote functional genomics in cassava.


2014 ◽  
Vol 159 (8) ◽  
pp. 2109-2113 ◽  
Author(s):  
Jitendra Kumar ◽  
Samatha Gunapati ◽  
Jitesh Kumar ◽  
Anita Kumari ◽  
Abhinav Kumar ◽  
...  

2012 ◽  
Vol 10 (8) ◽  
pp. 970-978 ◽  
Author(s):  
Xianbao Deng ◽  
Paula Elomaa ◽  
Cuong X. Nguyen ◽  
Timo Hytönen ◽  
Jari P. T. Valkonen ◽  
...  

2017 ◽  
Vol 60 (1) ◽  
pp. 34-44 ◽  
Author(s):  
Huijun Yan ◽  
Shaochuan Shi ◽  
Nan Ma ◽  
Xiaoqian Cao ◽  
Hao Zhang ◽  
...  

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