Faculty Opinions recommendation of Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

Author(s):  
Nina Papavasiliou
Nature ◽  
2010 ◽  
Vol 463 (7284) ◽  
pp. 1101-1105 ◽  
Author(s):  
Christian Popp ◽  
Wendy Dean ◽  
Suhua Feng ◽  
Shawn J. Cokus ◽  
Simon Andrews ◽  
...  

2012 ◽  
Vol 48 (6) ◽  
pp. 849-862 ◽  
Author(s):  
Stefanie Seisenberger ◽  
Simon Andrews ◽  
Felix Krueger ◽  
Julia Arand ◽  
Jörn Walter ◽  
...  

2019 ◽  
Vol 31 (3) ◽  
pp. 509 ◽  
Author(s):  
Minli Yu ◽  
Dongfeng Li ◽  
Wanyan Cao ◽  
Xiaolu Chen ◽  
Wenxing Du

Ten–eleven translocation 1 (Tet1) is involved in DNA demethylation in primordial germ cells (PGCs); however, the precise regulatory mechanism remains unclear. In the present study the dynamics of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) in developing PGCs and the role of Tet1 in PGC demethylation were analysed. Results show that 5mC levels dropped significantly after embryonic Day 4 (E4) and 5hmC levels increased reaching a peak at E5–E5.5. Interestingly, TET1 protein was highly expressed during E5 to E5.5, which showed a consistent trend with 5hmC. The expression of pluripotency-associated genes (Nanog, PouV and SRY-box 2 (Sox2)) and germ cell-specific genes (caveolin 1 (Cav1), piwi-like RNA-mediated gene silencing 1 (Piwi1) and deleted in azoospermia-like (Dazl)) was upregulated after E5, whereas the expression of genes from the DNA methyltransferase family was decreased. Moreover, the Dazl gene was highly methylated in early PGCs and then gradually hypomethylated. Knockdown of Tet1 showed impaired survival and proliferation of PGCs, as well as increased 5mC levels and reduced 5hmC levels. Further analysis showed that knockdown of Tet1 led to elevated DNA methylation levels of Dazl and downregulated gene expression including Dazl. Thus, this study reveals the dynamic epigenetic reprogramming of chicken PGCs invivo and the molecular mechanism of Tet1 in regulating genomic DNA demethylation and hypomethylation of Dazl during PGC development.


2020 ◽  
Author(s):  
Sabine Dietmann ◽  
Michael J Keogh ◽  
Walfred Tang ◽  
Erna Magnusdottir ◽  
Toshihiro Kobayashi ◽  
...  

ABSTRACTDespite the extensive erasure of DNA methylation in the early human germline, nearly eight percent of CpGs are resistant to the epigenetic resetting in the acutely hypomethylated primordial germ cells (week 7-9 hPGCs). Whether this occurs stochastically or represents relatively conserved layer of epigenetic information is unclear. Here we show that several predominantly hominoid-specific families of transposable elements (TEs) consistently resist DNA demethylation (henceforth called hPGC-methylated TEs or ‘escapees’) during the epigenetic resetting of hPGCs. Some of them undergo subsequent dynamic epigenetic changes during embryonic development. Our analysis of the fetal cerebral cortex also revealed multiple classes of young hPGC-methylated TEs within putative and established enhancers. Remarkably, specific hPGC-methylated TE subfamilies were associated with a multitude of adaptive human traits, including hair color and intelligence, and diseases including schizophrenia and Alzheimer’s disease. We postulate that hPGC-methylated TEs represent potentially heritable information within the germline with a role in human development and evolution.


2012 ◽  
Vol 22 (4) ◽  
pp. 633-641 ◽  
Author(s):  
S. Guibert ◽  
T. Forne ◽  
M. Weber

2013 ◽  
Vol 6 (S1) ◽  
Author(s):  
Julie Brind’Amour ◽  
Sheng Liu ◽  
Mehdi Karimi ◽  
Aaron Bogutz ◽  
Matthew Lorincz

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