Faculty Opinions recommendation of Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules.

Author(s):  
Julius Lukes
2014 ◽  
Vol 42 (22) ◽  
pp. 13764-13777 ◽  
Author(s):  
Matus Valach ◽  
Gertraud Burger ◽  
Michael W. Gray ◽  
B. Franz Lang

Author(s):  
D.F. Blake ◽  
LJ. Allamandola ◽  
G. Palmer ◽  
A. Pohorille

The natural history of the biogenic elements H, C, N, O, P and S in the cosmos is of great interest because it is these elements which comprise all life. Material ejected from stars (or pre-existing in the interstellar medium) is thought to condense into diffuse bodies of gravitationally bound gas and dust called cold interstellar molecular clouds. Current theories predict that within these clouds, at temperatures of 10-100° K, gases (primarily H2O, but including CO, CO2, CH3OH, NH3, and others) condense onto submicron silicate grains to form icy grain mantles. This interstellar ice represents the earliest and most primitive association of the biogenic elements. Within these multicomponent icy mantles, pre-biotic organic compounds are formed during exposure to UV radiation. It is thought that icy planetesimals (such as comets) within our solar system contain some pristine interstellar material, including ices, and may have (during the early bombardment of the solar system, ∼4 Ga) carried this material to Earth.Despite the widespread occurrence of astrophysical ices and their importance to pre-biotic organic evolution, few experimental data exist which address the relevant phase equilibria and possible structural states. A knowledge of the petrology of astrophysical ice analogs will allow scientists to more confidently interpret astronomical IR observations. Furthermore, the development and refinement of procedures for analyzing ices and other materials at cryogenic temperatures is critical to the study of materials returned from the proposed Rosetta comet nucleus and Mars sample return missions.


2021 ◽  
Author(s):  
Eryn Nelson ◽  
Jeffrey S. S. K. Formen ◽  
Christian Wolf

The widespread occurrence and significance of chiral compounds does not only require new methods for their enantioselective synthesis but also efficient tools that allow rapid determination of the absolute configuration,...


Toxins ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 406
Author(s):  
Mauro C. P. Vilar ◽  
Thiago F. C. P. Rodrigues ◽  
Luan O. Silva ◽  
Ana Beatriz F. Pacheco ◽  
Aloysio S. Ferrão-Filho ◽  
...  

Cyanobacteria stand out among phytoplankton when they form massive blooms and produce toxins. Because cyanotoxin genes date to the origin of metazoans, the hypothesis that cyanotoxins function as a defense against herbivory is still debated. Although their primary cellular function might vary, these metabolites could have evolved as an anti-predator response. Here we evaluated the physiological and molecular responses of a saxitoxin-producing Raphidiopsis raciborskii to infochemicals released by the grazer Daphnia gessneri. Induced chemical defenses were evidenced in R. raciborskii as a significant increase in the transcription level of sxt genes, followed by an increase in saxitoxin content when exposed to predator cues. Moreover, cyanobacterial growth decreased, and no significant effects on photosynthesis or morphology were observed. Overall, the induced defense response was accompanied by a trade-off between toxin production and growth. These results shed light on the mechanisms underlying zooplankton–cyanobacteria interactions in aquatic food webs. The widespread occurrence of the cyanobacterium R. raciborskii in freshwater bodies has been attributed to its phenotypic plasticity. Assessing the potential of this species to thrive over interaction filters such as zooplankton grazing pressure can enhance our understanding of its adaptive success.


Author(s):  
Judith Riedo ◽  
Felix E. Wettstein ◽  
Andrea Rösch ◽  
Chantal Herzog ◽  
Samiran Banerjee ◽  
...  

2021 ◽  
Author(s):  
Xian-Zheng Zhao ◽  
Cheng-Lin Gong ◽  
Li-Hong Zhou ◽  
Dong-Wei Li ◽  
Xiu-Gang Pu ◽  
...  

AbstractTopset-to-forest rollover trajectories and their relation to sediment- and sand-budget partitioning into deep-lake areas are far from being well understood, as compared with their marine counterparts of shelf edges. Two quantitatively distinctive topset-to-forest rollover trajectories and clinothem-stacking patterns were recognized in the Oligocene Qikou Sag of the Bohai Bay Basin and are quantified in terms of trajectory angles (Tse), topset thickness (Tt), forest thickness (Tf), bottomset thickness (Tb), and clinothem-set relief (Rc). Rising topset-to-forest trajectories have positive Tse of 0.15°–0.51° (averaging 0.35°). Ranges in Tt, Tf, Tb, and Rc of their associated progradational and aggradational clinothem sets are, respectively, 32.4–58.7 m (averaging 42.7 m), 76.9–176.2 m (averaging 148.3 m), 0 m, and 167.8–320.8 m (averaging 272.9 m). Falling topset-to-forest rollover trajectories, in contrast, have negative Tse of − 0.12° to − 0.02° (averaging − 0.06°). Ranges in Tt, Tf, Tb, and Rc of their associated progradational and downstepping clinothem sets are, respectively, 0 m, 266.0–395.7 m (averaging 333.4 m), 441.1–542.5 m (averaging 464.1), and 874.9–922.6 m (averaging 892.5 m). These two topset-to-forest rollover trajectories and clinothem-stacking patterns are closely linked to two distinctive patterns of sediment- and sand-volume partitioning into deep-lake areas, which are quantified in terms of Tt, Tb, and differential sediment aggradation of topset segments and forest-to-bottomset compartments (As/Ad). Rising topset-to-forest rollover trajectories and associated progradational and aggradational clinothem sets are characterized by aggradational topsets (reported as Tt of 32.4–58.7 m), a lack of time-equivalent bottomsets, and As/Ad of 0.22–0.87 (averaging 0.33), and are fronted by mud-dominated depositional deposits, with sporadic occurrence of thinner and regionally localized forest sands. They are, therefore, inefficient at delivering terrestrial sediments or sands into deep-lake settings. Falling topset-to-forest rollover trajectories and associated progradational and downstepping clinothem sets, in contrast, are characterized by toplap, erosional terminations but aggradational bottomsets (reported as Tb of 266.0–473.4 m), and As/Ad of 0, and are fronted by sand-rich depositional deposits, with widespread occurrence of thicker and regionally extensive time-equivalent deep-lake bottomset sands. They are, thus, efficient at delivering terrestrial sediments or sands into deep-lake settings. Topset-to-forest rollover trajectories and associated clinothem-stacking patterns are thus reliable predictors of sediment- and sand-volume partitioning into deep-lake areas, assisting greatly in developing a more dynamic stratigraphy.


Database ◽  
2020 ◽  
Vol 2020 ◽  
Author(s):  
Tao Liu ◽  
Yutong Cui ◽  
Xuli Jia ◽  
Jing Zhang ◽  
Ruoran Li ◽  
...  

Abstract Algae are the oldest taxa on Earth, with an evolutionary relationship that spans prokaryotes (Cyanobacteria) and eukaryotes. A long evolutionary history has led to high algal diversity. Their organelle DNAs are characterized by uniparental inheritance and a compact genome structure compared with nuclear genomes; thus, they are efficient molecular tools for the analysis of gene structure, genome structure, organelle function and evolution. However, an integrated organelle genome database for algae, which could enable users to both examine and use relevant data, has not previously been developed. Therefore, to provide an organelle genome platform for algae, we have developed a user-friendly database named Organelle Genome Database for Algae (OGDA, http://ogda.ytu.edu.cn/). OGDA contains organelle genome data either retrieved from several public databases or sequenced in our laboratory (Laboratory of Genetics and Breeding of Marine Organism [MOGBL]), which are continuously updated. The first release of OGDA contains 1055 plastid genomes and 755 mitochondrial genomes. Additionally, a variety of applications have been integrated into this platform to analyze the structural characteristics, collinearity and phylogeny of organellar genomes for algae. This database represents a useful tool for users, enabling the rapid retrieval and analysis of information related to organellar genomes for biological discovery.


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