Parallel Particle Swarm Optimization for Global Multiple Sequence Alignment

Amgad Kamal; Mohsen Mahroos; Ahmed Sayed; Amin Nassar

doi:10.3923/itj.2012.998.1006

Parallel Particle Swarm Optimization for Global Multiple Sequence Alignment

Information Technology Journal ◽

10.3923/itj.2012.998.1006 ◽

2012 ◽

Vol 11 (8) ◽

pp. 998-1006 ◽

Cited By ~ 3

Author(s):

Amgad Kamal ◽

Mohsen Mahroos ◽

Ahmed Sayed ◽

Amin Nassar

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Parallel Particle Swarm Optimization

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An improved algorithm for Multiple Sequence Alignment using Particle Swarm Optimization

2011 IEEE 2nd International Conference on Software Engineering and Service Science ◽

10.1109/icsess.2011.5982374 ◽

2011 ◽

Cited By ~ 2

Author(s):

P.V.S.L. Jagadamba ◽

M. Surendra Prasad Babu ◽

Allam Appa Rao ◽

P. Krishna Subba Rao

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Improved Algorithm

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Multiple sequence alignment using the Hidden Markov Model trained by an improved quantum-behaved particle swarm optimization

Information Sciences ◽

10.1016/j.ins.2010.11.014 ◽

2012 ◽

Vol 182 (1) ◽

pp. 93-114 ◽

Cited By ~ 36

Author(s):

Jun Sun ◽

Xiaojun Wu ◽

Wei Fang ◽

Yangrui Ding ◽

Haixia Long ◽

...

Keyword(s):

Particle Swarm Optimization ◽

Markov Model ◽

Hidden Markov Model ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Hidden Markov ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization

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A Hidden Markov Model and Immune Particle Swarm Optimization-Based Algorithm for Multiple Sequence Alignment

AI 2005: Advances in Artificial Intelligence - Lecture Notes in Computer Science ◽

10.1007/11589990_78 ◽

2005 ◽

pp. 756-765 ◽

Cited By ~ 2

Author(s):

Hong-Wei Ge ◽

Yan-Chun Liang

Keyword(s):

Particle Swarm Optimization ◽

Markov Model ◽

Hidden Markov Model ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Hidden Markov ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization

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A Multiple Sequence Alignment Algorithm Based on Inertia Weights Particle Swarm Optimization

Journal of Bionanoscience ◽

10.1166/jbns.2014.1257 ◽

2014 ◽

Vol 8 (5) ◽

pp. 400-404 ◽

Cited By ~ 2

Author(s):

Yuxi Gao

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Particle Swarm ◽

Alignment Algorithm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Sequence Alignment Algorithm

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A Novel Multiple Sequence Alignment Algorithm Based on Artificial Bee Colony and Particle Swarm Optimization

Communications in Computer and Information Science - Recent Advances in Data Science ◽

10.1007/978-981-15-8760-3_11 ◽

2020 ◽

pp. 152-169

Author(s):

Fangjun Kuang ◽

Siyang Zhang

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Artificial Bee Colony ◽

Particle Swarm ◽

Alignment Algorithm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Bee Colony ◽

Sequence Alignment Algorithm

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Multiple Sequence Alignment by Improved Hidden Markov Model Training and Quantum-Behaved Particle Swarm Optimization

Lecture Notes in Computer Science - Life System Modeling and Intelligent Computing ◽

10.1007/978-3-642-15615-1_43 ◽

2010 ◽

pp. 358-366 ◽

Cited By ~ 3

Author(s):

Chengyuan Li ◽

Haixia Long ◽

Yanrui Ding ◽

Jun Sun ◽

Wenbo Xu

Keyword(s):

Particle Swarm Optimization ◽

Markov Model ◽

Hidden Markov Model ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Hidden Markov ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Model Training

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Particle Swarm Optimization with Tabu Search Algorithm (PSO-TS) Applied to Multiple Sequence Alignment Problem

Advances in Multidisciplinary Medical Technologies ─ Engineering, Modeling and Findings ◽

10.1007/978-3-030-57552-6_8 ◽

2020 ◽

pp. 103-114

Author(s):

Lamiche Chaabane ◽

Abdeldjalil Khelassi ◽

Andrey Terziev ◽

Nikolaos Andreopoulos ◽

M. A. de Jesus ◽

...

Keyword(s):

Particle Swarm Optimization ◽

Tabu Search ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Search Algorithm ◽

Particle Swarm ◽

Tabu Search Algorithm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Alignment Problem

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A Novel Binary Particle Swarm Optimization for Multiple Sequence Alignment

Intelligent Computing Theories and Application - Lecture Notes in Computer Science ◽

10.1007/978-3-030-26969-2_2 ◽

2019 ◽

pp. 13-25

Author(s):

Yanlian Du ◽

Jingxuan He ◽

Changcun Du

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Particle Swarm ◽

Binary Particle Swarm Optimization ◽

Multiple Sequence ◽

Swarm Optimization

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Multiple sequence alignment using modified dynamic programming and particle swarm optimization

Journal of the Chinese Institute of Engineers ◽

10.1080/02533839.2008.9671419 ◽

2008 ◽

Vol 31 (4) ◽

pp. 659-673 ◽

Cited By ~ 7

Author(s):

Wang‐Sheng Juang ◽

Shun‐Feng Su

Keyword(s):

Dynamic Programming ◽

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization

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Prediction of Multiple Sequence Alignment Based on an Improved Particle Swarm Optimization

Journal of Bionanoscience ◽

10.1166/jbns.2013.1087 ◽

2013 ◽

Vol 7 (1) ◽

pp. 92-96

Author(s):

Yu-Xi Gao ◽

Yan-Min Wang ◽

Zhi-Li Pei

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Particle Swarm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Improved Particle Swarm Optimization

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