Detection of circulating HCV recombinant form RF1_2k/1b in blood serum of patients by real-time RT-PCR

2021 ◽  
Vol 66 (2) ◽  
pp. 122-128
Author(s):  
Ivan Alekseevich Akimov ◽  
D. I. Timofeev ◽  
A. R. Mavzyutov ◽  
M. K. Ivanov

Globally, about 70 million people are infected with the hepatitis C virus (HCV), and about 400 thousand people die annually from chronic hepatitis C complications. The management of patients with chronic hepatitis C may require HCV genotyping, since the efficiency of some widely used antiviral drugs strongly depend on the viral genotype and/or subtype. The most prevalent HCV circulating recombinant form, RF1_2k/1b, is misclassified as genotype 2 by many commercial HCV genotyping kits, based on the RT-PCR analysis of the 5’ untranslated region of the HCV genome. This leads to inappropriate patient treatment, since the accepted treatment schemes for HCV genotype 2 are ineffective for the RF1_2k/1b. Here we describe a method for detecting the RNA HCV RF1_2k/1b in blood samples by RT-PCR analysis of two regions in HCV genome (5’UTR and NS5b). The method was tested on 240 blood serum samples from HCV infected patients, in which HCV genotype was defined as 2 or mixed (2+1 or 2+3) by the two commercial genotyping kits “OT-Hepatogen-C genotype” (“DNA-Technology”, Moscow) and “RealBest RNA HCV-1/2/3” (“Vector- Best “, Novosibirsk). 50 (20.8%) RF1_2k/1b cases were revealed, including three mixed infections: RF1_2k/1b + 1a, RF1_2k/1b + 3a, RF1_2k/1b + 1b. In all cases, the accuracy of HCV typing by the proposed method was confirmed by Sanger sequencing and phylogenetic analysis. The method is easy to implement into clinical practice and may be used in clinical settings equipped for RT-PCR analysis to correctly identify the recombinant variant RF1_2k/1b.

2000 ◽  
Vol 118 (4) ◽  
pp. A1469
Author(s):  
Dirk Michels ◽  
Christian I. Haberkorn ◽  
Burkhard Arndt ◽  
Michael P. Manns

2005 ◽  
Vol 19 (3) ◽  
pp. 153-156 ◽  
Author(s):  
John D Farley ◽  
Victor K Wong ◽  
Henry V Chung ◽  
Elizabeth Lim ◽  
Gavin Walters ◽  
...  

PURPOSE: To assess sustained viral response rate and adherence to standard interferon alpha-2b and ribavirin therapy in inmates with chronic hepatitis C (HCV) in Canadian penitentiaries in the Pacific region.OBJECTIVE: A retrospective chart review of all inmates with chronic HCV who were treated with standard interferon alpha-2b and ribavirin therapy between March 2001 and October 2002.RESULTS: A total of 90 male inmates were treated. The mean age at time of treatment was 40 years. There were 49 inmates with HCV genotype 1, 11 with HCV genotype 2 and 30 with HCV genotype 3. Eight inmates discontinued treatment because of intolerance to side effects. Nine inmates were stopped by the physician because of nonresponse at an average of 27 weeks. All inmates achieved at least 80% adherence of interferon and ribavirin therapy. The overall sustained virological response (SVR) was 55.9%. SVR was 31.6% for genotype 1, 100% for genotype 2 and 71.4% for genotype 3.CONCLUSION: There was excellent SVR and adherence to treatment with interferon and ribavirin. This experience highlights an important opportunity to treat a population with a high prevalence of HCV-positive persons who may otherwise not seek treatment.


Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 2276-2276
Author(s):  
Maria Elisa Mancuso ◽  
Alessio Aghemo ◽  
Elena Santagostino ◽  
Maria Grazia Rumi ◽  
Raffaele Bruno ◽  
...  

Abstract Abstract 2276 Background: Chronic hepatitis C is the main cause of morbidity and mortality in patients with hemophilia. HCV eradication is the only approach that can halt disease progression and it may be attempted by using antiviral therapy, the standard of care being represented by the combination of pegylated interferon (Peg-IFN) plus ribavirin. Sustained virologic response (SVR) is defined by undetectable HCV-RNA in serum 6 months after therapy completion. The likelihood of a SVR depends on various host and viral factors, as sex, stage of liver fibrosis, HCV genotype and viral kinetics during treatment, being the rapid virologic response (RVR; undetectable HCV-RNA in serum after 4 weeks of therapy) a strong predictor of SVR. Recently, it has been reported that a single-nucleotide polymorphism (SNP) near the IL28B gene, named rs12979860, is a predictor of response to therapy in non-hemophiliacs. This SNP may be genotyped as CC, CT or TT and the CC variant has been associated with higher rates of SVR and with higher rates of spontaneous viral clearance after acute infection. Methods and Results: the SNP was determined by Polymerase Chain Reaction in 189 patients with hemophilia aged 37–54 years (median: 44) infected with HCV. Fifty-five patients (29%) were HIV and 10 (5%) HBV co-infected. HCV genotype 1 was the most prevalent (n=124, 73%) and the IL28B SNP was CC in 70 (37%), CT in 104 (55%) and TT in 15 (8%). The median duration of HCV infection was 34 years (IQR: 28–39) and the median age at antiviral treatment 38 years (IQR: 31–46). Clinical signs of cirrhosis were present in 22 patients (12%). Fifteen patients (8%) had spontaneous clearance of viral infection and 134 (71%) of those with chronic infection underwent antiviral therapy that was Peg-IFN plus ribavirin in 114 (85%). Overall SVR rate was 49% (37% in patients with HCV genotype 1 and 70% in those with HCV genotype 2 or 3). Rapid, early and sustained virologic response were more frequent in patients carrying the CC SNP than in those carrying a non-CC SNP (59 vs 17%, 90 vs 71% and 67 vs 39%, respectively; p<0.05). By stratifying patients by HCV genotype, the presence of the CC variant was associated with higher RVR rate in patients with HCV type 1 (40 vs 9%; p<0.01), while no difference was observed in patients with HCV type 2 or 3. By univariate logistic regression HCV genotype 2 or 3, the CC IL28B SNP, the absence of cirrhosis and RVR were predictors of SVR (Odds Ratio 4.0, 3.1, 4.5 and 10.2, respectively). By multivariate analysis, only RVR was confirmed as independent predictor of SVR (Adjusted Odds Ratio 7.2; 95%CI 2.2–23.8). Moreover, the presence of the CC IL28B SNP was more prevalent among patients who had a spontaneous clearance of HCV infection (60% vs 35% in those who have chronic hepatitis C). Conclusions: The IL28B SNP may serve as pre-treatment predictor of IFN-based therapies outcome in patients with hemophilia and chronic hepatitis C, since the CC variant is associated with a higher chance of SVR. Our data also confirm that on-treatment viral kinetics has a key role and a stronger impact on the final outcome, since the achievement of RVR was the only independent predictor of SVR. However, due to the higher chances of SVR, the presence of a CC IL28B SNP should encourage the attempt at eradicating HCV infection in patients with genotype 1 by using the standard of care instead of waiting for new antiviral drugs that may increase therapy-related side effects. Disclosures: No relevant conflicts of interest to declare.


1970 ◽  
Vol 21 (2) ◽  
pp. 182-193
Author(s):  
M Abdul Ahad

Pegylated interferon α (peginterferon α) plus ribavirin is the present mainstay of treatment for patients with chronic HCV infection. When peginterferon α plus ribavirin is administered for the standard duration, a sustained virological response is achieved in around 50% of patients infected with HCV genotype 1 and around 80% of patients infected with HCV genotype 2 or 3. Data now suggest that treatment duration can be shortened or lengthened depending on baseline viral load and/or early on-treatment viral kinetics, offering the prospect of individualizing therapy further to improve response or to prevent treatment from being unnecessarily extended. Further efforts to optimize therapy are likely to involve the use of new anti-HCV agents, several of which are currently in the early stages of development. These agents include HCV protease inhibitors (particularly those against NS3-4A protease), HCV polymerase inhibitors (including both nucleoside and non-nucleoside analogs) and cyclophilin inhibitors. These compounds will be used, at least initially, in combination with peginterferon α plus ribavirin, extending the pivotal role of interferon-based therapy in the management of chronic hepatitis C. doi: 10.3329/taj.v21i2.3804 TAJ 2008; 21(2): 182-193


2009 ◽  
Vol 29 (9) ◽  
pp. 1350-1355 ◽  
Author(s):  
Avidan U. Neumann ◽  
Vincent G. Bain ◽  
Eric M. Yoshida ◽  
Keyur Patel ◽  
Erik Pulkstenis ◽  
...  

2002 ◽  
Vol 36 ◽  
pp. 245
Author(s):  
Maria Grazia Rumi ◽  
Francesca De Filippi ◽  
Carlo La Vecchia ◽  
Silvano Gallus ◽  
Roberta Soffredini ◽  
...  

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