scholarly journals 3D CENTRAL LINE EXTRACTION OF FOSSIL OYSTER SHELLS

2016 ◽  
Vol III-5 ◽  
pp. 121-128 ◽  
Author(s):  
A. Djuricic ◽  
E. Puttonen ◽  
M. Harzhauser ◽  
O. Mandic ◽  
B. Székely ◽  
...  
Keyword(s):  
Point Cloud ◽  
Age Determination ◽  
Oyster Shell ◽  
Monitoring And Evaluation ◽  
Central Line ◽  
3D Point Cloud ◽  
Central Lines ◽  
Cloud Data ◽  
Shell Boundary ◽  
Cubic Spline Curve

Photogrammetry provides a powerful tool to digitally document protected, inaccessible, and rare fossils. This saves manpower in relation to current documentation practice and makes the fragile specimens more available for paleontological analysis and public education. In this study, high resolution orthophoto (0.5 mm) and digital surface models (1 mm) are used to define fossil boundaries that are then used as an input to automatically extract fossil length information via central lines. In general, central lines are widely used in geosciences as they ease observation, monitoring and evaluation of object dimensions. Here, the 3D central lines are used in a novel paleontological context to study fossilized oyster shells with photogrammetric and LiDAR-obtained 3D point cloud data. 3D central lines of 1121 <i>Crassostrea gryphoides</i> oysters of various shapes and sizes were computed in the study. Central line calculation included: i) Delaunay triangulation between the fossil shell boundary points and formation of the Voronoi diagram; ii) extraction of Voronoi vertices and construction of a connected graph tree from them; iii) reduction of the graph to the longest possible central line via Dijkstra’s algorithm; iv) extension of longest central line to the shell boundary and smoothing by an adjustment of cubic spline curve; and v) integration of the central line into the corresponding 3D point cloud. The resulting longest path estimate for the 3D central line is a size parameter that can be applied in oyster shell age determination both in paleontological and biological applications. Our investigation evaluates ability and performance of the central line method to measure shell sizes accurately by comparing automatically extracted central lines with manually collected reference data used in paleontological analysis. Our results show that the automatically obtained central line length overestimated the manually collected reference by 1.5% in the test set, which is deemed sufficient for the selected paleontological application, namely shell age determination.

scholarly journals 3D CENTRAL LINE EXTRACTION OF FOSSIL OYSTER SHELLS

2016 ◽  
Vol III-5 ◽  
pp. 121-128 ◽  
Author(s):  
A. Djuricic ◽  
E. Puttonen ◽  
M. Harzhauser ◽  
O. Mandic ◽  
B. Székely ◽  
...  
Keyword(s):  
Point Cloud ◽  
Age Determination ◽  
Oyster Shell ◽  
Monitoring And Evaluation ◽  
Central Line ◽  
3D Point Cloud ◽  
Central Lines ◽  
Cloud Data ◽  
Shell Boundary ◽  
Cubic Spline Curve

Photogrammetry provides a powerful tool to digitally document protected, inaccessible, and rare fossils. This saves manpower in relation to current documentation practice and makes the fragile specimens more available for paleontological analysis and public education. In this study, high resolution orthophoto (0.5 mm) and digital surface models (1 mm) are used to define fossil boundaries that are then used as an input to automatically extract fossil length information via central lines. In general, central lines are widely used in geosciences as they ease observation, monitoring and evaluation of object dimensions. Here, the 3D central lines are used in a novel paleontological context to study fossilized oyster shells with photogrammetric and LiDAR-obtained 3D point cloud data. 3D central lines of 1121 &lt;i&gt;Crassostrea gryphoides&lt;/i&gt; oysters of various shapes and sizes were computed in the study. Central line calculation included: i) Delaunay triangulation between the fossil shell boundary points and formation of the Voronoi diagram; ii) extraction of Voronoi vertices and construction of a connected graph tree from them; iii) reduction of the graph to the longest possible central line via Dijkstra’s algorithm; iv) extension of longest central line to the shell boundary and smoothing by an adjustment of cubic spline curve; and v) integration of the central line into the corresponding 3D point cloud. The resulting longest path estimate for the 3D central line is a size parameter that can be applied in oyster shell age determination both in paleontological and biological applications. Our investigation evaluates ability and performance of the central line method to measure shell sizes accurately by comparing automatically extracted central lines with manually collected reference data used in paleontological analysis. Our results show that the automatically obtained central line length overestimated the manually collected reference by 1.5% in the test set, which is deemed sufficient for the selected paleontological application, namely shell age determination.

scholarly journals Label3DMaize: toolkit for 3D point cloud data annotation of maize shoots

GigaScience ◽  
2021 ◽  
Vol 10 (5) ◽  
Author(s):  
Teng Miao ◽  
Weiliang Wen ◽  
Yinglun Li ◽  
Sheng Wu ◽  
Chao Zhu ◽  
...  
Keyword(s):  
Deep Learning ◽  
Point Cloud ◽  
Training Dataset ◽  
Growth Stages ◽  
3D Point Cloud ◽  
Plant Structure ◽  
Data Annotation ◽  
Cloud Data ◽  
Point Cloud Segmentation ◽  
Different Growth Stages

Abstract Background The 3D point cloud is the most direct and effective data form for studying plant structure and morphology. In point cloud studies, the point cloud segmentation of individual plants to organs directly determines the accuracy of organ-level phenotype estimation and the reliability of the 3D plant reconstruction. However, highly accurate, automatic, and robust point cloud segmentation approaches for plants are unavailable. Thus, the high-throughput segmentation of many shoots is challenging. Although deep learning can feasibly solve this issue, software tools for 3D point cloud annotation to construct the training dataset are lacking. Results We propose a top-to-down point cloud segmentation algorithm using optimal transportation distance for maize shoots. We apply our point cloud annotation toolkit for maize shoots, Label3DMaize, to achieve semi-automatic point cloud segmentation and annotation of maize shoots at different growth stages, through a series of operations, including stem segmentation, coarse segmentation, fine segmentation, and sample-based segmentation. The toolkit takes ∼4–10 minutes to segment a maize shoot and consumes 10–20% of the total time if only coarse segmentation is required. Fine segmentation is more detailed than coarse segmentation, especially at the organ connection regions. The accuracy of coarse segmentation can reach 97.2% that of fine segmentation. Conclusion Label3DMaize integrates point cloud segmentation algorithms and manual interactive operations, realizing semi-automatic point cloud segmentation of maize shoots at different growth stages. The toolkit provides a practical data annotation tool for further online segmentation research based on deep learning and is expected to promote automatic point cloud processing of various plants.

Fast Intent Prediction of Multi-Cyclists in 3D Point Cloud Data using Deep Neural Networks

2021 ◽  
Author(s):  
Khaled Saleh ◽  
Ahmed Abobakr ◽  
Mohammed Hossny ◽  
Darius Nahavandi ◽  
Julie Iskander ◽  
...  
Keyword(s):  
Neural Networks ◽  
Point Cloud ◽  
Deep Neural Networks ◽  
3D Point Cloud ◽  
Point Cloud Data ◽  
Cloud Data ◽  
Intent Prediction

Automated Surface Inspection Using 3D Point Cloud Data in Manufacturing: A Case Study

2018 ◽  
Author(s):  
Romina Dastoorian ◽  
Ahmad E. Elhabashy ◽  
Wenmeng Tian ◽  
Lee J. Wells ◽  
Jaime A. Camelio
Keyword(s):  
Point Cloud ◽  
Surface Defect ◽  
Fault Location ◽  
Three Dimensional ◽  
Practical Case ◽  
3D Point Cloud ◽  
Point Cloud Data ◽  
Defect Inspection ◽  
Cloud Data

With the latest advancements in three-dimensional (3D) measurement technologies, obtaining 3D point cloud data for inspection purposes in manufacturing is becoming more common. While 3D point cloud data allows for better inspection capabilities, their analysis is typically challenging. Especially with unstructured 3D point cloud data, containing coordinates at random locations, the challenges increase with higher levels of noise and larger volumes of data. Hence, the objective of this paper is to extend the previously developed Adaptive Generalized Likelihood Ratio (AGLR) approach to handle unstructured 3D point cloud data used for automated surface defect inspection in manufacturing. More specifically, the AGLR approach was implemented in a practical case study to inspect twenty-seven samples, each with a unique fault. These faults were designed to cover an array of possible faults having three different sizes, three different magnitudes, and located in three different locations. The results show that the AGLR approach can indeed differentiate between non-faulty and a varying range of faulty surfaces while being able to pinpoint the fault location. This work also serves as a validation for the previously developed AGLR approach in a practical scenario.

scholarly journals Fast and Robust Flight Altitude Estimation of Multirotor UAVs in Dynamic Unstructured Environments Using 3D Point Cloud Sensors

Aerospace ◽  
2018 ◽  
Vol 5 (3) ◽  
pp. 94 ◽  
Author(s):  
Hriday Bavle ◽  
Jose Sanchez-Lopez ◽  
Paloma Puente ◽  
Alejandro Rodriguez-Ramos ◽  
Carlos Sampedro ◽  
...  
Keyword(s):  
Point Cloud ◽  
Point Clouds ◽  
Estimation Algorithm ◽  
Indoor Environments ◽  
3D Point Cloud ◽  
Flight Altitude ◽  
Cloud Data ◽  
3D Point Clouds ◽  
Laser Altimeters ◽  
Altitude Estimation

This paper presents a fast and robust approach for estimating the flight altitude of multirotor Unmanned Aerial Vehicles (UAVs) using 3D point cloud sensors in cluttered, unstructured, and dynamic indoor environments. The objective is to present a flight altitude estimation algorithm, replacing the conventional sensors such as laser altimeters, barometers, or accelerometers, which have several limitations when used individually. Our proposed algorithm includes two stages: in the first stage, a fast clustering of the measured 3D point cloud data is performed, along with the segmentation of the clustered data into horizontal planes. In the second stage, these segmented horizontal planes are mapped based on the vertical distance with respect to the point cloud sensor frame of reference, in order to provide a robust flight altitude estimation even in presence of several static as well as dynamic ground obstacles. We validate our approach using the IROS 2011 Kinect dataset available in the literature, estimating the altitude of the RGB-D camera using the provided 3D point clouds. We further validate our approach using a point cloud sensor on board a UAV, by means of several autonomous real flights, closing its altitude control loop using the flight altitude estimated by our proposed method, in presence of several different static as well as dynamic ground obstacles. In addition, the implementation of our approach has been integrated in our open-source software framework for aerial robotics called Aerostack.

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