Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology

The common chaffinch, Fringilla coelebs, is one of the most common, widespread, and well-studied passerines in Europe, with a broad distribution encompassing Western Europe and parts of Asia, North Africa, and the Macaronesian archipelagos. We present a high-quality genome assembly of the common chaffinch generated using Illumina shotgun sequencing in combination with Chicago and Hi-C libraries. The final genome is a 994.87-Mb chromosome-level assembly, with 98% of the sequence data located in chromosome scaffolds and a N50 statistic of 69.73 Mb. Our genome assembly shows high completeness, with a complete BUSCO score of 93.9% using the avian data set. Around 7.8% of the genome contains interspersed repetitive elements. The structural annotation yielded 17,703 genes, 86.5% of which have a functional annotation, including 7,827 complete universal single-copy orthologs out of 8,338 genes represented in the BUSCO avian data set. This new annotated genome assembly will be a valuable resource as a reference for comparative and population genomic analyses of passerine, avian, and vertebrate evolution.

Archaic Dialect of Chaffinch, Fringilla coelebs (Passeriformes, Fringillidae), Song in the Lower-Dnipro Area (South Ukraine) and Its Territorial Relations

Archaic song dialect of Chaffinch (Fringilla coelebs Linnaeus, 1758) is located in the Lower-Dnipro Area. To describe it, we recorded 11673 songs of 2008 males from 43 localities in Southern Ukraine during 2004–2015. This dialect has compound spatial structure and connects with other dialects forming a well developed contact area with them. Its core was located in old forests of the lower stream of the Dnipro River. It has spread from them to the new forests in their outskirts. The complex is separated at dialect level in the cluster analysis. It includes considerable number of original song types. Their elements and structure demonstrate archaic features similar to those of other southern complexes but more modern than the old Carpathian and Danube dialects. It occupies the intermediate position between them and modern dialects of the Forest and Wood-and-Steppe Ukraine by the structure of song and is similar to the dialect of Crimean Chaffinch and the song complex of South-Eastern Ukraine.

Chromosome-level genome assembly of the common chaffinch (Aves: Fringilla coelebs): a valuable resource for evolutionary biology

The common chaffinch, Fringilla coelebs, is one of the most common, widespread and well-studied passerines in Europe, with a broad distribution encompassing Western Europe and parts of Asia, North Africa and the Macaronesian archipelagos. We present a high-quality genome assembly of the common chaffinch generated using Illumina shotgun sequencing in combination with Chicago and Hi-C libraries. The final genome is a 994.87 Mb chromosome-level assembly, with 98% of the sequence data located in chromosome scaffolds and a N50 statistic of 69.73 Mb. Our genome assembly shows high completeness, with a complete BUSCO score of 93.9% using the avian dataset. Around 7.8 % of the genome contains interspersed repetitive elements. The structural annotation yielded 17,703 genes, 86.5% of which have a functional annotation, including 7,827 complete universal single-copy orthologs out of 8,338 genes represented in the BUSCO avian data set. This new annotated genome assembly will be a valuable resource as a reference for comparative and population genomic analyses of passerine, avian and vertebrate evolution.

Trophic links of the chaffinch (Fringilla coelebs) in transformed forest ecosystems of North-Eastern Ukraine

The сhaffinch (Fringilla coelebs Linnaeus, 1758; Passeriformes, Fringillidae) is one of the most colourful forest species of birds living in Europe, West Asia and North Africa. The diet of this species was studied as a contribution to the conservation of the population of this species in transformed forests of the north-eastern part of Ukraine. Four forest ecosystems were studied: three model sites in oak forests, transformed under intensive recreation pressure, and one model site in a pine-oak forest. A total of 39 invertebrate taxa, dominated by Insecta (93.0%) were found. The orders Coleoptera (32.6%) and Lepidoptera (63.5%) prevailed in the diet of finch nestlings, the highest number of taxa (52.3–76.2%) was represented by phytophages. The phytophagous species also constituted the majority of the consumed prey items (44.0–55.6%). Environmental conditions provided an important effect on the diet structure. The most favourable foraging conditions for the species were found in protected natural areas. According to the analysis, the finch foraging efficiency was similar in all the studied sites. The highest biodiversity indices were found in a protected area of Homilshanski Forests National Nature Park. Results of the research have indicated the crucial role of Fringilla coelebs in the population management of potentially dangerous agricultural pests.