fitness surface
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2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Michael Schauperl ◽  
Sophie M Kantonen ◽  
Lee-Ping Wang ◽  
Michael K Gilson

AbstractForce fields used in molecular simulations contain numerical parameters, such as Lennard–Jones (LJ) parameters, which are assigned to the atoms in a molecule based on a classification of their chemical environments. The number of classes, or types, should be no more than needed to maximize agreement with experiment, as parsimony avoids overfitting and simplifies parameter optimization. However, types have historically been crafted based largely on chemical intuition, so current force fields may contain more types than needed. In this study, we seek the minimum number of LJ parameter types needed to represent the key properties of organic liquids. We find that highly competitive force field accuracy is obtained with minimalist sets of LJ types; e.g., two H types and one type apiece for C, O, and N atoms. We also find that the fitness surface has multiple minima, which can lead to local trapping of the optimizer.


2013 ◽  
Vol 280 (1773) ◽  
pp. 20132353 ◽  
Author(s):  
Sandra Steiger ◽  
Geoffrey D. Ower ◽  
Johannes Stökl ◽  
Christopher Mitchell ◽  
John Hunt ◽  
...  

Cuticular hydrocarbons (CHCs) play an essential role in mate recognition in insects but the form and intensity of sexual selection on CHCs has only been evaluated in a handful of studies, and never in a natural population. We quantified sexual selection operating on CHCs in a wild population of sagebrush crickets, a species in which nuptial feeding by females imposes an unambiguous phenotypic marker on males. Multivariate selection analysis revealed a saddle-shaped fitness surface, suggesting a complex interplay between the total abundance of CHCs and specific CHC combinations in their influence on female choice. The fitness surface resulting from two axes of disruptive selection reflected a trade-off between short- and long-chained CHCs, suggesting that males may be sacrificing some level of desiccation resistance in favour of increased attractiveness. There was a significant correlation between male body size and total CHC abundance, suggesting that male CHCs provide females with a reliable cue for maximizing benefits obtained from males. Notwithstanding the conspicuousness of males’ acoustic signals, our results suggest that selection imposed on males via female mating preferences may be far more complex than previously appreciated and operating in multiple sensory modalities.


PLoS Biology ◽  
2006 ◽  
Vol 4 (11) ◽  
pp. e372 ◽  
Author(s):  
Scott D Peacor ◽  
Stefano Allesina ◽  
Rick L Riolo ◽  
Mercedes Pascual

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