binding site similarity Latest Research Papers

Resolving protein structure-function-binding site relationships from a binding site similarity network perspective

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.25293 ◽

2017 ◽

Vol 85 (7) ◽

pp. 1319-1335 ◽

Cited By ~ 4

Author(s):

Richa Mudgal ◽

Narayanaswamy Srinivasan ◽

Nagasuma Chandra

Keyword(s):

Protein Structure ◽

Structure Function ◽

Binding Site ◽

Similarity Network ◽

Binding Site Similarity

Comparing atom-based with residue-based descriptors in predicting binding site similarity: do backbone atoms matter?

Future Medicinal Chemistry ◽

10.4155/fmc-2016-0077 ◽

2016 ◽

Vol 8 (15) ◽

pp. 1871-1885 ◽

Cited By ~ 1

Author(s):

Noé Sturm ◽

Didier Rognan ◽

Ronald J Quinn ◽

Esther Kellenberger

Keyword(s):

Binding Site ◽

Binding Site Similarity ◽

Backbone Atoms

Polypharmacology rescored: Protein–ligand interaction profiles for remote binding site similarity assessment

Progress in Biophysics and Molecular Biology ◽

10.1016/j.pbiomolbio.2014.05.006 ◽

2014 ◽

Vol 116 (2-3) ◽

pp. 174-186 ◽

Cited By ~ 42

Author(s):

Sebastian Salentin ◽

V. Joachim Haupt ◽

Simone Daminelli ◽

Michael Schroeder

Keyword(s):

Binding Site ◽

Ligand Interaction ◽

Similarity Assessment ◽

Protein Ligand Interaction ◽

Binding Site Similarity

Correction: Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

PLoS ONE ◽

10.1371/annotation/0852cc69-8cea-4966-bb8a-ae0b348d1bd9 ◽

2013 ◽

Vol 8 (12) ◽

Cited By ~ 14

Author(s):

V. Joachim Haupt ◽

Simone Daminelli ◽

Michael Schroeder

Keyword(s):

Protein Binding ◽

Binding Site ◽

Protein Binding Site ◽

Binding Site Similarity

Binding Site Similarity Search to Identify Novel Target–Ligand Complexes

Computational Chemogenomics ◽

10.1201/b15631-8 ◽

2013 ◽

pp. 183-206

Keyword(s):

Binding Site ◽

Similarity Search ◽

Binding Site Similarity ◽

Novel Target

Faculty Opinions recommendation of Drug promiscuity in PDB: protein binding site similarity is key.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718026434.793479743 ◽

2013 ◽

Author(s):

John Lowe

Keyword(s):

Protein Binding ◽

Binding Site ◽

Protein Binding Site ◽

Binding Site Similarity

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

PLoS ONE ◽

10.1371/journal.pone.0065894 ◽

2013 ◽

Vol 8 (6) ◽

pp. e65894 ◽

Cited By ~ 85

Author(s):

V. Joachim Haupt ◽

Simone Daminelli ◽

Michael Schroeder

Keyword(s):

Protein Binding ◽

Binding Site ◽

Protein Binding Site ◽

Binding Site Similarity

Ligand Binding Site Similarity Identification Based on Chemical and Geometric Similarity

The Protein Journal ◽

10.1007/s10930-013-9494-1 ◽

2013 ◽

Vol 32 (5) ◽

pp. 373-385 ◽

Cited By ~ 2

Author(s):

Haibo Tu ◽

Tieliu Shi

Keyword(s):

Ligand Binding ◽

Binding Site ◽

Ligand Binding Site ◽

Geometric Similarity ◽

Binding Site Similarity

Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparison

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24018 ◽

2012 ◽

Vol 80 (4) ◽

pp. 1177-1195 ◽

Cited By ~ 39

Author(s):

Lee Sael ◽

Daisuke Kihara

Keyword(s):

Ligand Binding ◽

Binding Site ◽

Surface Patch ◽

Ligand Binding Site ◽

Binding Site Similarity

Correction: Binding of Protein Kinase Inhibitors to Synapsin I Inferred from Pair-Wise Binding Site Similarity Measurements

PLoS ONE ◽

10.1371/annotation/95078306-dc3b-4441-b2b1-dd986b734570 ◽

2010 ◽

Vol 5 (10) ◽

Cited By ~ 4

Author(s):

Enrico Defranchi ◽

Claire Schalon ◽

Mirko Messa ◽

Franco Onofri ◽

Fabio Benfenati ◽

...

Keyword(s):

Protein Kinase ◽

Binding Site ◽

Kinase Inhibitors ◽

Protein Kinase Inhibitors ◽

Synapsin I ◽

Binding Site Similarity

binding site similarity
Recently Published Documents

TOTAL DOCUMENTS

H-INDEX

Resolving protein structure-function-binding site relationships from a binding site similarity network perspective

Comparing atom-based with residue-based descriptors in predicting binding site similarity: do backbone atoms matter?

Polypharmacology rescored: Protein–ligand interaction profiles for remote binding site similarity assessment

Correction: Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

Binding Site Similarity Search to Identify Novel Target–Ligand Complexes

Faculty Opinions recommendation of Drug promiscuity in PDB: protein binding site similarity is key.

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

Ligand Binding Site Similarity Identification Based on Chemical and Geometric Similarity

Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparison

Correction: Binding of Protein Kinase Inhibitors to Synapsin I Inferred from Pair-Wise Binding Site Similarity Measurements

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binding site similarityRecently Published Documents

TOTAL DOCUMENTS

H-INDEX

Resolving protein structure-function-binding site relationships from a binding site similarity network perspective

Comparing atom-based with residue-based descriptors in predicting binding site similarity: do backbone atoms matter?

Polypharmacology rescored: Protein–ligand interaction profiles for remote binding site similarity assessment

Correction: Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

Binding Site Similarity Search to Identify Novel Target–Ligand Complexes

Faculty Opinions recommendation of Drug promiscuity in PDB: protein binding site similarity is key.

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

Ligand Binding Site Similarity Identification Based on Chemical and Geometric Similarity

Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparison

Correction: Binding of Protein Kinase Inhibitors to Synapsin I Inferred from Pair-Wise Binding Site Similarity Measurements

binding site similarity
Recently Published Documents