Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis
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Published By Humana Press

9781588299109, 9781597452519

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Estimating Maximum Likelihood Phylogenies with PhyML

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_6 ◽

2009 ◽

pp. 113-137 ◽

Author(s):

Stéphane Guindon ◽

Frédéric Delsuc ◽

Jean-François Dufayard ◽

Olivier Gascuel

Keyword(s):

Maximum Likelihood

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Computational Gene Annotation in New Genome Assemblies Using GeneID

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_12 ◽

2009 ◽

pp. 243-261 ◽

Author(s):

Enrique Blanco ◽

Josep F. Abril

Keyword(s):

Gene Annotation ◽

Genome Assemblies

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Gene Orthology Assessment with OrthologID

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_2 ◽

2009 ◽

pp. 23-38 ◽

Author(s):

Mary Egan ◽

Ernest K. Lee ◽

Joanna C. Chiu ◽

Gloria Coruzzi ◽

Rob DeSalle

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Multiple Alignment of DNA Sequences with MAFFT

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_3 ◽

2009 ◽

pp. 39-64 ◽

Author(s):

Kazutaka Katoh ◽

George Asimenos ◽

Hiroyuki Toh

Keyword(s):

Dna Sequences ◽

Multiple Alignment

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DNA Sequence Polymorphism Analysis Using DnaSP

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_17 ◽

2009 ◽

pp. 337-350 ◽

Author(s):

Julio Rozas

Keyword(s):

Dna Sequence ◽

Sequence Polymorphism ◽

Polymorphism Analysis ◽

Dna Sequence Polymorphism

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Recombination Detection and Analysis Using RDP3

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_9 ◽

2009 ◽

pp. 185-205 ◽

Author(s):

Darren P. Martin

Keyword(s):

Recombination Detection

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Genetic Code Prediction for Metazoan Mitochondria with GenDecoder

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_11 ◽

2009 ◽

pp. 233-242 ◽

Author(s):

Federico Abascal ◽

Rafael Zardoya ◽

David Posada

Keyword(s):

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SeqVis: A Tool for Detecting Compositional Heterogeneity Among Aligned Nucleotide Sequences

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_4 ◽

2009 ◽

pp. 65-91 ◽

Author(s):

Lars Sommer Jermiin ◽

Joshua Wing Kei Ho ◽

Kwok Wai Lau ◽

Vivek Jayaswal

Keyword(s):

Nucleotide Sequences ◽

Compositional Heterogeneity

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Analysis of Genomic DNA with the UCSC Genome Browser

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_14 ◽

2009 ◽

pp. 277-301 ◽

Author(s):

Jonathan Pevsner

Keyword(s):

Genomic Dna ◽

Ucsc Genome Browser ◽

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Selection of Models of DNA Evolution with jModelTest

Methods in Molecular Biology - Bioinformatics for DNA Sequence Analysis ◽

10.1007/978-1-59745-251-9_5 ◽

2009 ◽

pp. 93-112 ◽

Author(s):

David Posada

Keyword(s):

Dna Evolution ◽

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