scholarly journals Choices on sampling, sequencing, and analyzing DNA influence the estimation of community composition of plant fungal symbionts

2021 ◽  
Author(s):  
Jonathan A. Cale ◽  
Natalie Scott ◽  
Gregory J. Pec ◽  
Simon M. Landhäusser ◽  
Justine Karst
Keyword(s):  
Community Composition

Community composition and size structure of murid rodents in relation to the biogeography of the Japanese archipelago

Ecography ◽  
2000 ◽  
Vol 23 (4) ◽  
pp. 413-423 ◽  
Author(s):  
Virginie Millien-Parra ◽  
Michel Loreau
Keyword(s):  
Community Composition ◽  
Size Structure ◽  
Japanese Archipelago ◽  
Murid Rodents ◽  
The Japanese Archipelago

Temporal dynamics of mycorrhizal fungal communities and co-associations with grassland plant communities following experimental manipulation of rainfall

2019 ◽  
Author(s):  
Coline Deveautour ◽  
Sally Power ◽  
Kirk Barnett ◽  
Raul Ochoa-Hueso ◽  
Suzanne Donn ◽  
...  
Keyword(s):  
Community Composition ◽  
Plant Community ◽  
Plant Communities ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Temporal Dynamics ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Plant Responses ◽  
Rainfall Regimes

Climate models project overall a reduction in rainfall amounts and shifts in the timing of rainfall events in mid-latitudes and sub-tropical dry regions, which threatens the productivity and diversity of grasslands. Arbuscular mycorrhizal fungi may help plants to cope with expected changes but may also be impacted by changing rainfall, either via the direct effects of low soil moisture on survival and function or indirectly via changes in the plant community. In an Australian mesic grassland (former pasture) system, we characterised plant and arbuscular mycorrhizal (AM) fungal communities every six months for nearly four years to two altered rainfall regimes: i) ambient, ii) rainfall reduced by 50% relative to ambient over the entire year and iii) total summer rainfall exclusion. Using Illumina sequencing, we assessed the response of AM fungal communities sampled from contrasting rainfall treatments and evaluated whether variation in AM fungal communities was associated with variation in plant community richness and composition. We found that rainfall reduction influenced the fungal communities, with the nature of the response depending on the type of manipulation, but that consistent results were only observed after more than two years of rainfall manipulation. We observed significant co-associations between plant and AM fungal communities on multiple dates. Predictive co-correspondence analyses indicated more support for the hypothesis that fungal community composition influenced plant community composition than vice versa. However, we found no evidence that altered rainfall regimes were leading to distinct co-associations between plants and AM fungi. Overall, our results provide evidence that grassland plant communities are intricately tied to variation in AM fungal communities. However, in this system, plant responses to climate change may not be directly related to impacts of altered rainfall regimes on AM fungal communities. Our study shows that AM fungal communities respond to changes in rainfall but that this effect was not immediate. The AM fungal community may influence the composition of the plant community. However, our results suggest that plant responses to altered rainfall regimes at our site may not be resulting via changes in the AM fungal communities.

Shifts in cell size and community composition of bacterioplankton due to grazing by heterotrophic flagellates: evidence from a marine system

2019 ◽  
Vol 83 (3) ◽  
pp. 295-308
Author(s):  
MG Weinbauer ◽  
S Suominen ◽  
J Jezbera ◽  
ME Kerros ◽  
S Marro ◽  
...  
Keyword(s):  
Cell Size ◽  
Community Composition ◽  
Heterotrophic Flagellates ◽  
Marine System

Dissolved oxygen and temperature best predict deep-sea fish community structure in the Gulf of California with climate change implications

2020 ◽  
Vol 637 ◽  
pp. 159-180
Author(s):  
ND Gallo ◽  
M Beckwith ◽  
CL Wei ◽  
LA Levin ◽  
L Kuhnz ◽  
...  
Keyword(s):  
Climate Change ◽  
Community Structure ◽  
Community Composition ◽  
Environmental Conditions ◽  
Deep Sea ◽  
Gulf Of California ◽  
Fish Community ◽  
Demersal Fish ◽  
Fish Community Structure ◽  
Explained Variance

Natural gradient systems can be used to examine the vulnerability of deep-sea communities to climate change. The Gulf of California presents an ideal system for examining relationships between faunal patterns and environmental conditions of deep-sea communities because deep-sea conditions change from warm and oxygen-rich in the north to cold and severely hypoxic in the south. The Monterey Bay Aquarium Research Institute (MBARI) remotely operated vehicle (ROV) ‘Doc Ricketts’ was used to conduct seafloor video transects at depths of ~200-1400 m in the northern, central, and southern Gulf. The community composition, density, and diversity of demersal fish assemblages were compared to environmental conditions. We tested the hypothesis that climate-relevant variables (temperature, oxygen, and primary production) have more explanatory power than static variables (latitude, depth, and benthic substrate) in explaining variation in fish community structure. Temperature best explained variance in density, while oxygen best explained variance in diversity and community composition. Both density and diversity declined with decreasing oxygen, but diversity declined at a higher oxygen threshold (~7 µmol kg-1). Remarkably, high-density fish communities were observed living under suboxic conditions (<5 µmol kg-1). Using an Earth systems global climate model forced under an RCP8.5 scenario, we found that by 2081-2100, the entire Gulf of California seafloor is expected to experience a mean temperature increase of 1.08 ± 1.07°C and modest deoxygenation. The projected changes in temperature and oxygen are expected to be accompanied by reduced diversity and related changes in deep-sea demersal fish communities.

Effects of crop rotation with wild rocket on cucumber seedling rhizosphere fungal community composition

2019 ◽  
Vol 47 (1) ◽  
pp. 83-92 ◽  
Author(s):  
X. Jin ◽  
D. L. Li ◽  
F Z. Wu ◽  
K. Pan ◽  
X G. Zhou
Keyword(s):  
Community Composition ◽  
Crop Rotation ◽  
Fungal Community ◽  
Cucumber Seedling ◽  
Fungal Community Composition ◽  
Wild Rocket
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