scholarly journals Method for quick DNA barcode reference library construction

2021 ◽  
Author(s):  
Yanlei Liu ◽  
Chao Xu ◽  
Yuzhe Sun ◽  
Xun Chen ◽  
Wenpan Dong ◽  
...  
2015 ◽  
Vol 15 (6) ◽  
pp. 1366-1374 ◽  
Author(s):  
Chao Xu ◽  
Wenpan Dong ◽  
Shuo Shi ◽  
Tao Cheng ◽  
Changhao Li ◽  
...  

2019 ◽  
Author(s):  
Erwan Delrieu-Trottin ◽  
Jeffrey T. Williams ◽  
Diane Pitassy ◽  
Amy Driskell ◽  
Nicolas Hubert ◽  
...  

AbstractThe emergence of DNA barcoding and metabarcoding opened new ways to study biological diversity, however, the completion of DNA barcode libraries is fundamental for such approaches to succeed. This dataset is a DNA barcode reference library (fragment of Cytochrome Oxydase I gene) for 2,190 specimens representing at least 540 species of shore fishes collected over 10 years at 154 sites across the four volcanic archipelagos of French Polynesia; the Austral, Gambier, Marquesas and Society Islands, a 5,000,000 km2area. At present, 65% of the known shore fish species of these archipelagoes possess a DNA barcode associated with preserved, photographed, tissue sampled and cataloged specimens, and extensive collection locality data. This dataset represents one of the most comprehensive DNA barcoding efforts for a vertebrate fauna to date. Considering the challenges associated with the conservation of coral reef fishes and the difficulties of accurately identifying species using morphological characters, this publicly available library is expected to be helpful for both authorities and academics in various fields.


2021 ◽  
Vol 43 (1) ◽  
pp. 141-145
Author(s):  
C Fagg ◽  
NL Phair ◽  
L Claassens ◽  
RSK Barnes ◽  
S von der Heyden

2017 ◽  
Vol 8 ◽  
Author(s):  
Jinxin Liu ◽  
Linchun Shi ◽  
Jingyuan Song ◽  
Wei Sun ◽  
Jianping Han ◽  
...  

2016 ◽  
Vol 3 ◽  
Author(s):  
Vieira Pedro ◽  
Gomes Nuno ◽  
Lobo Jorge ◽  
Borges Luisa ◽  
Queiroga Henrique ◽  
...  

Limnetica ◽  
2020 ◽  
Vol 39 (1) ◽  
pp. 73-92
Author(s):  
Cesc Múrria ◽  
Simona Somma ◽  
Owen S. Wangensteen ◽  
Miquel A. Arnedo ◽  
Narcís Prat

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Vlad Dincă ◽  
Sergio Montagud ◽  
Gerard Talavera ◽  
Juan Hernández-Roldán ◽  
Miguel L. Munguira ◽  
...  

Genome ◽  
2016 ◽  
Vol 59 (9) ◽  
pp. 671-684 ◽  
Author(s):  
Axel Hausmann ◽  
Scott E. Miller ◽  
Jeremy D. Holloway ◽  
Jeremy R. deWaard ◽  
David Pollock ◽  
...  

It is essential that any DNA barcode reference library be based upon correctly identified specimens. The Barcode of Life Data Systems (BOLD) requires information such as images, geo-referencing, and details on the museum holding the voucher specimen for each barcode record to aid recognition of potential misidentifications. Nevertheless, there are misidentifications and incomplete identifications (e.g., to a genus or family) on BOLD, mainly for species from tropical regions. Unfortunately, experts are often unavailable to correct taxonomic assignments due to time constraints and the lack of specialists for many groups and regions. However, considerable progress could be made if barcode records were available for all type specimens. As a result of recent improvements in analytical protocols, it is now possible to recover barcode sequences from museum specimens that date to the start of taxonomic work in the 18th century. The present study discusses success in the recovery of DNA barcode sequences from 2805 type specimens of geometrid moths which represent 1965 species, corresponding to about 9% of the 23 000 described species in this family worldwide and including 1875 taxa represented by name-bearing types. Sequencing success was high (73% of specimens), even for specimens that were more than a century old. Several case studies are discussed to show the efficiency, reliability, and sustainability of this approach.


Diversity ◽  
2016 ◽  
Vol 8 (1) ◽  
pp. 5 ◽  
Author(s):  
Craig Costion ◽  
Andrew Lowe ◽  
Maurizio Rossetto ◽  
Robert Kooyman ◽  
Martin Breed ◽  
...  

2014 ◽  
pp. n/a-n/a ◽  
Author(s):  
Thomas Knebelsberger ◽  
Monica Landi ◽  
Hermann Neumann ◽  
Matthias Kloppmann ◽  
Anne F. Sell ◽  
...  

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