scholarly journals Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow

2018 ◽  
Vol 2 (4) ◽  
pp. 297-309 ◽  
Author(s):  
Anja M. Westram ◽  
Marina Rafajlović ◽  
Pragya Chaube ◽  
Rui Faria ◽  
Tomas Larsson ◽  
...  
Keyword(s):  
Gene Flow ◽  
Genomic Architecture ◽  
The Face ◽  
Rapid Divergence

Shallow genetic divergence and distinct phenotypic differences between two Andean hummingbirds: Speciation with gene flow?

The Auk ◽  
2019 ◽  
Vol 136 (4) ◽  
Author(s):  
Catalina Palacios ◽  
Silvana García-R ◽  
Juan Luis Parra ◽  
Andrés M Cuervo ◽  
F Gary Stiles ◽  
...  
Keyword(s):  
Gene Flow ◽  
Genetic Differentiation ◽  
Incomplete Lineage Sorting ◽  
Lineage Sorting ◽  
Phenotypic Differences ◽  
Adaptive Mechanisms ◽  
The Face ◽  
Gloger’S Rule ◽  
Divergence With Gene Flow ◽  
Neutral Markers

Abstract Ecological speciation can proceed despite genetic interchange when selection counteracts the homogenizing effects of migration. We tested predictions of this divergence-with-gene-flow model in Coeligena helianthea and C. bonapartei, 2 parapatric Andean hummingbirds with marked plumage divergence. We sequenced putatively neutral markers (mitochondrial DNA [mtDNA] and nuclear ultraconserved elements [UCEs]) to examine genetic structure and gene flow, and a candidate gene (MC1R) to assess its role underlying divergence in coloration. We also tested the prediction of Gloger’s rule that darker forms occur in more humid environments, and examined morphological variation to assess adaptive mechanisms potentially promoting divergence. Genetic differentiation between species was low in both ND2 and UCEs. Coalescent estimates of migration were consistent with divergence with gene flow, but we cannot reject incomplete lineage sorting reflecting recent speciation as an explanation for patterns of genetic variation. MC1R variation was unrelated to phenotypic differences. Species did not differ in macroclimatic niches but were distinct in morphology. Although we reject adaptation to variation in macroclimatic conditions as a cause of divergence, speciation may have occurred in the face of gene flow driven by other ecological pressures or by sexual selection. Marked phenotypic divergence with no neutral genetic differentiation is remarkable for Neotropical birds, and makes C. helianthea and C. bonapartei an appropriate system in which to search for the genetic basis of species differences employing genomics.

scholarly journals Microsatellite DNA Evidence for Gene Flow in Neotropical Lek-Mating Long-Tailed Manakins

The Condor ◽  
2003 ◽  
Vol 105 (3) ◽  
pp. 580-586 ◽  
Author(s):  
David B. McDonald
Keyword(s):  
Sexual Selection ◽  
Gene Flow ◽  
Costa Rica ◽  
Clustering Analysis ◽  
Elevational Gradient ◽  
Dna Evidence ◽  
Lek Mating ◽  
Rapid Divergence ◽  
Para Determinar ◽  
Single Cluster

Abstract I genotyped lek-mating Long-tailed Manakins (Chiroxiphia linearis) at Monteverde and Santa Rosa, Costa Rica, 115 km apart. Cavalli-Sforza distance was 0.04, DLR was 0.18, and RST and θ were both 0.02. Bayesian clustering analysis indicated that both populations were part of a single cluster rather than from distinct clusters. I present a binomial test for probability of allelic absence as a function of sample size. Genotypic likelihood tests assigned 50% of Monteverde birds to Santa Rosa, versus 26% of Santa Rosa birds to Monteverde. Two lines of evidence supported the idea of asymmetric gene flow up the elevational gradient from Santa Rosa to Monteverde. Low differentiation at this spatial scale, despite intense sexual selection, suggests that sexual selection alone is unlikely to promote rapid divergence leading to speciation. Reduced gene flow, produced by geographic barriers or behavioral factors, may also be required. Evidencia de Flujo Génico Mediante ADN Microsatelital en Chiroxiphia linearis, un Ave Neotropical con Estrategia Reproductiva Tipo “Lek” Resumen. Determiné el genotipo de individuos de Chiroxiphia linearis en dos poblaciones separadas por 115 km, Monteverde y Santa Rosa en Costa Rica. La distancia de Cavalli-Sforza fue 0.04, DLR fue 0.18, y tanto el valor de RST como el de θ fue 0.02. Un análisis de agrupamiento bayesiano indicó que ambas poblaciones pertenecen a un mismo grupo y no a dos grupos diferentes. Presento una prueba binomial para determinar la probabilidad de ausencia alélica como una función del tamaño muestral. La prueba de probabilidad genotípica asignó al 50% de los individuos de Monteverde a la población de Santa Rosa, mientras que un 26% de los individuos de Santa Rosa fue asignado a Monteverde. Dos líneas de evidencia apoyan la idea de flujo génico asimétrico hacia arriba del gradiente altitudinal entre Santa Rosa y Monteverde. A pesar de la intensa presión selectiva sexual, la baja diferenciación a esta escala espacial sugiere que probablemente la selección sexual por sí sola no promueve la rápida divergencia que conduce a la especiación. También se requeriría reducción del flujo génico a través de barreras geográficas y factores conductuales.

scholarly journals Population Genomic Evidence Reveals Subtle Patterns of Differentiation in the Trophically Polymorphic Cuatro Ciénegas Cichlid, Herichthys minckleyi

2019 ◽  
Vol 110 (3) ◽  
pp. 361-369 ◽  
Author(s):  
Katherine L Bell ◽  
Chris C Nice ◽  
Darrin Hulsey
Keyword(s):  
Gene Flow ◽  
Biological Diversity ◽  
Molecular Genetic ◽  
Molecular Ecology ◽  
Cichlid Fish ◽  
Genome Wide ◽  
A Genome ◽  
The Face ◽  
Or Gene ◽  
Herichthys Minckleyi

Abstract In recent decades, an increased understanding of molecular ecology has led to a reinterpretation of the role of gene flow during the evolution of reproductive isolation and biological novelty. For example, even in the face of ongoing gene flow strong selection may maintain divergent polymorphisms, or gene flow may introduce novel biological diversity via hybridization and introgression from a divergent species. Herein, we elucidate the evolutionary history and genomic basis of a trophically polymorphic trait in a species of cichlid fish, Herichthys minckleyi. We explored genetic variation at 3 hierarchical levels; between H. minckleyi (n = 69) and a closely related species Herichthys cyanoguttatus (n = 10), between H. minckleyi individuals from 2 geographic locations, and finally between individuals with alternate morphotypes at both a genome-wide and locus-specific scale. We found limited support for the hypothesis that the H. minckleyi polymorphism is the result of ongoing hybridization between the 2 species. Within H. minckleyi we found evidence of geographic genetic structure, and using traditional population genetic analyses found that individuals of alternate morphotypes within a pool appear to be panmictic. However, when we used a locus-specific approach to examine the relationship between multi-locus genotype, tooth size, and geographic sampling, we found the first evidence for molecular genetic differences between the H. minckleyi morphotypes.

scholarly journals The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

Science ◽  
2014 ◽  
Vol 344 (6190) ◽  
pp. 1410-1414 ◽  
Author(s):  
J. W. Poelstra ◽  
N. Vijay ◽  
C. M. Bossu ◽  
H. Lantz ◽  
B. Ryll ◽  
...  
Keyword(s):  
Gene Flow ◽  
Genomic Landscape ◽  
The Face

scholarly journals Adaptive signal coloration maintained in the face of gene flow in a Hispaniolan Anolis Lizard

2016 ◽  
Vol 16 (1) ◽  
Author(s):  
Julienne Ng ◽  
Alison G. Ossip-Klein ◽  
Richard E. Glor
Keyword(s):  
Gene Flow ◽  
Anolis Lizard ◽  
The Face ◽  
Adaptive Signal

scholarly journals Altitudinal gradients, plant hybrid zones and evolutionary novelty

2014 ◽  
Vol 369 (1648) ◽  
pp. 20130346 ◽  
Author(s):  
Richard J. Abbott ◽  
Adrian C. Brennan
Keyword(s):  
Gene Flow ◽  
Mount Etna ◽  
Hybrid Zones ◽  
Evolutionary Novelty ◽  
Altitudinal Gradients ◽  
Interspecific Gene Flow ◽  
Adaptive Introgression ◽  
Local Environments ◽  
The Face ◽  
Plant Hybrid

Altitudinal gradients are characterized by steep changes of the physical and biotic environment that present challenges to plant adaptation throughout large parts of the world. Hybrid zones may form where related species inhabit different neighbouring altitudes and can facilitate interspecific gene flow and potentially the breakdown of species barriers. Studies of such hybrid zones can reveal much about the genetic basis of adaptation to environmental differences stemming from changes in altitude and the maintenance of species divergence in the face of gene flow. Furthermore, owing to recombination and transgressive effects, such hybrid zones can be sources of evolutionary novelty. We document plant hybrid zones associated with altitudinal gradients and emphasize similarities and differences in their structure. We then focus on recent studies of a hybrid zone between two Senecio species that occur at high and low altitude on Mount Etna, Sicily, showing how adaptation to local environments and intrinsic selection against hybrids act to maintain it. Finally, we consider the potential of altitudinal hybrid zones for generating evolutionary novelty through adaptive introgression and hybrid speciation. Examples of homoploid hybrid species of Senecio and Pinus that originated from altitudinal hybrid zones are discussed.

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