An improved nucleic acid parameter set for the GROMOS force field

2005 ◽  
Vol 26 (7) ◽  
pp. 725-737 ◽  
Author(s):  
Thereza A. Soares ◽  
Philippe H. Hünenberger ◽  
Mika A. Kastenholz ◽  
Vincent Kräutler ◽  
Thomas Lenz ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Force Field ◽  
Gromos Force Field

scholarly journals A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fields

2018 ◽  
Vol 39 (28) ◽  
pp. 2360-2370 ◽  
Author(s):  
Adam K. Sieradzan ◽  
Artur Giełdoń ◽  
Yanping Yin ◽  
Yi He ◽  
Harold A. Scheraga ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Force Field ◽  
Force Fields ◽  
Coarse Grained ◽  
Protein Nucleic Acid ◽  
New Protein

New parameterization of the Cornell et al. empirical force field covering amino group nonplanarity in nucleic acid bases

2003 ◽  
Vol 24 (15) ◽  
pp. 1891-1902 ◽  
Author(s):  
Filip Ryj�?ek ◽  
Tom�? Kuba? ◽  
Pavel Hobza
Keyword(s):  
Nucleic Acid ◽  
Force Field ◽  
Amino Group ◽  
Nucleic Acid Bases ◽  
Empirical Force Field

Molecular dynamics of B-DNA including water and counterions: a 140-ps trajectory for d(CGCGAATTCGCG) based on the GROMOS force field

1991 ◽  
Vol 113 (13) ◽  
pp. 5027-5040 ◽  
Author(s):  
S. Swaminathan ◽  
G. Ravishanker ◽  
David L. Beveridge
Keyword(s):  
Molecular Dynamics ◽  
Force Field ◽  
Gromos Force Field

scholarly journals Definition and testing of the GROMOS force-field versions 54A7 and 54B7

2011 ◽  
Vol 40 (7) ◽  
pp. 843-856 ◽  
Author(s):  
Nathan Schmid ◽  
Andreas P. Eichenberger ◽  
Alexandra Choutko ◽  
Sereina Riniker ◽  
Moritz Winger ◽  
...  
Keyword(s):  
Force Field ◽  
Gromos Force Field

Molecular dynamics simulation of the proline conformational equilibrium and dynamics in antamanide using the GROMOS force field

1993 ◽  
Vol 115 (11) ◽  
pp. 4764-4768 ◽  
Author(s):  
R. M. Brunne ◽  
W. F. van Gunsteren ◽  
R. Brueschweiler ◽  
R. R. Ernst
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Force Field ◽  
Conformational Equilibrium ◽  
Dynamics Simulation ◽  
Gromos Force Field
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