gromos force field
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2019 ◽  
Vol 253 ◽  
pp. 106214
Author(s):  
Yujia Hu ◽  
Tong Zhao ◽  
Liang Zou ◽  
Xiaolong Wang ◽  
Yuantao Zhang


2019 ◽  
Vol 15 (2) ◽  
pp. 1168-1186 ◽  
Author(s):  
Karina Nester ◽  
Karolina Gaweda ◽  
Wojciech Plazinski


2018 ◽  
Vol 14 (10) ◽  
pp. 5383-5392 ◽  
Author(s):  
Rafael Nunes ◽  
Diogo Vila-Viçosa ◽  
Miguel Machuqueiro ◽  
Paulo J. Costa


2017 ◽  
Vol 38 (10) ◽  
pp. 714-720 ◽  
Author(s):  
Christian Margreitter ◽  
Maria M. Reif ◽  
Chris Oostenbrink


2016 ◽  
Vol 115 (9-12) ◽  
pp. 1144-1154 ◽  
Author(s):  
Maria Pechlaner ◽  
Maria M. Reif ◽  
Chris Oostenbrink


2015 ◽  
Vol 11 (7) ◽  
pp. 2925-2937 ◽  
Author(s):  
Andreas P. Eichenberger ◽  
Wei Huang ◽  
Sereina Riniker ◽  
Wilfred F. van Gunsteren


2014 ◽  
Vol 13 (02) ◽  
pp. 1450009 ◽  
Author(s):  
Ashour A. Ahmed ◽  
Peter Leinweber ◽  
Oliver Kühn

The fate of hexachlorobenzene (HCB) in soil represents a critical environmental problem. Once HCB has reached the soil it will interact with soil constituents, especially soil organic matter (SOM). The understanding of this interaction is important for choosing effective remediation procedures. Here we report a study of binding of HCB to a test set of molecules, which was developed to mimic representative functional groups of SOM. The binding energy of complexes formed by HCB and the test set molecules were investigated at different levels of theory. Effects of different types of dispersion correction to DFT, basis sets and DFT-functionals have been studied. Moreover, the general ability of dispersion-corrected DFT to represent this interaction has been benchmarked against methods such as MP2 and CCSD. As a result the B3LYP-D3 dispersion correction combined with the 6-311++G(2d,2p) basis set was found to be a compromise between accuracy and efficiency and it is recommended for studying this type of non-covalent interaction. Moreover, the performance of the GROMOS force field in the description of this interaction has been tested.



2012 ◽  
Vol 8 (11) ◽  
pp. 4681-4690 ◽  
Author(s):  
Laercio Pol-Fachin ◽  
Victor H. Rusu ◽  
Hugo Verli ◽  
Roberto D. Lins


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