Marked Reduction of Helicobacter pylori-Induced Gastritis by Urease Inhibitors, Acetohydroxamic Acid and Flurofamide, in Mongolian Gerbils

2001 ◽  
Vol 285 (3) ◽  
pp. 728-733 ◽  
Author(s):  
Toshihisa Ohta ◽  
Hideyuki Shibata ◽  
Toshihiko Kawamori ◽  
Masaki Iimuro ◽  
Takashi Sugimura ◽  
...  
2002 ◽  
Vol 46 (8) ◽  
pp. 2613-2618 ◽  
Author(s):  
Hetal Mishra ◽  
Abby L. Parrill ◽  
John S. Williamson

ABSTRACT A homology model of Helicobacter pylori urease was developed by using the crystal structure of urease from Klebsiella aerogenes (EC 3.5.1.5) as a template. The acetohydroxamic acid moiety was docked into the active pocket of the enzyme model, followed by relaxation of the complex by use of molecular dynamics. The resulting conformation was used as a template to construct 24 potential dipeptide hydroxamic acid inhibitors with which comparative molecular field analysis (CoMFA) was performed. The resulting model provided a cross-validation correlation coefficient (q 2 L00) of 0.610, a conventional r 2 value of 0.988, and an F (Fisher indication of statistical significance) value of 294.88. We were able to validate the CoMFA model by using the 50% inhibitory concentrations of six compounds that were not included in the construction of the model. A very good structural correlation was observed between the amino acids in the model urease's active pocket and the contour maps derived from the CoMFA model. This correlation, accompanied by the validation supplied by use of the CoMFA data, illustrates that the model can aid in the prediction and design of novel H. pylori urease inhibitors.


2020 ◽  
Vol 16 ◽  
Author(s):  
Wei-Wei Ni ◽  
Hai-Lian Fang ◽  
Ya-Xi Ye ◽  
Wei-Yi Li ◽  
Li Liu ◽  
...  

Background: Thiourea is a classical urease inhibitor usually as a positive control, and many N,N`-disubstituted thioureas have been determined as urease inhibitors. However, due to steric hindrance, N,N`-disubstituted thiourea motif could not bind urease as thiourea. On the contrary, N-monosubstituted thioureas with a tiny thiourea motif could theoretically bind into the active pocket as thiourea. Objective: A series of N-monosubstituted aroylthioureas were designed and synthesized for evaluation as urease inhibitors. Methods: Urease inhibition was determined by the indophenol method and IC50 values were calculated using computerized linear regression analysis of quantal log dose-probit functions. The kinetic parameters were estimated viasurface plasmon resonance (SPR) and by nonlinear regression analysis based on the mixed type inhibition model derived from Michaelis-Menten kinetics. Results: Compounds b2, b11and b19 reversibly inhibited urease with a mixed mechanism, and showed excellent potency against both cell-free urease and urease in intact cell, with IC50 values being 90-to 450-fold and 5-to 50-fold lower than the positive control acetohydroxamic acid, respectively. The most potent compound b11 showed IC50 value of 0.060 ±0.004μM against cell-free urease, which bound to urea binding site with a very low KDvalue (0.420±0.003nM) and a very long residence time (6.7 min). Compound b11was also demonstrated having very low cytotoxicity to mammalian cells. Conclusion: These results revealed that N-monosubstituted aroylthioureas clearly bind the active site of urease as expected, and represent a new class of urease inhibitors for the development of potential therapeutics against infections caused by ure-ase-containing pathogens.


Helicobacter ◽  
2008 ◽  
Vol 13 (1) ◽  
pp. 20-29 ◽  
Author(s):  
Guo Qing Li ◽  
Harry H. X. Xia ◽  
Min Hu Chen ◽  
Tetsuya Tsukamoto ◽  
Masae Tatematsu ◽  
...  

2014 ◽  
Vol 70 ◽  
pp. 107-113 ◽  
Author(s):  
Takanori Yamada ◽  
Min Wei ◽  
Takeshi Toyoda ◽  
Shoutaro Yamano ◽  
Hideki Wanibuchi

2008 ◽  
Vol 43 (1) ◽  
pp. 32-37 ◽  
Author(s):  
Chao-Hung Kuo ◽  
Huang-Ming Hu ◽  
Pei-Yun Tsai ◽  
Sheau-Fang Yang ◽  
Lin-Li Chang ◽  
...  

2012 ◽  
Vol 48 (2) ◽  
pp. 109-115
Author(s):  
Eun-Jung Bak ◽  
Sung-Il Jang ◽  
Yun-Hui Choi ◽  
Jin-Moon Kim ◽  
Ae-Ryun Kim ◽  
...  

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