A 9.1-kb Gap in the Genome Reference Map Is Shown to Be a Stable Deletion/Insertion Polymorphism of Ancestral Origin

Genomics ◽  
2002 ◽  
Vol 80 (6) ◽  
pp. 585-592 ◽  
Author(s):  
Renato Robledo ◽  
Sandro Orru ◽  
Antonella Sidoti ◽  
Rosella Muresu ◽  
Diane Esposito ◽  
...  
Keyword(s):  
Insertion Polymorphism ◽  
Ancestral Origin ◽  
Reference Map

scholarly journals A volume-preserving reference map method for the level set representation

2021 ◽  
Vol 442 ◽  
pp. 110478
Author(s):  
Maxime Theillard
Keyword(s):  
Level Set ◽  
Reference Map ◽  
Volume Preserving

scholarly journals Phylogenetic relationships among accessions in Citrus and related genera based on the insertion polymorphism of the CIRE1 retrotransposon

2020 ◽  
Vol 5 (1) ◽  
pp. 243-251
Author(s):  
Akira Horibata ◽  
Tsuneo Kato
Keyword(s):  
Phylogenetic Relationships ◽  
Sweet Orange ◽  
Point Of View ◽  
Insertion Polymorphism ◽  
Navel Orange ◽  
Citrus Germplasm ◽  
Outgroup Species ◽  
Blood Orange

AbstractA total of 145 accessions of the genus Citrus and related genera, maintained in the Conservation Garden for Citrus Germplasm at the Experimental Farm of Kindai University, Yuasa, Wakayama, Japan, were examined for their phylogenetic relationships. The present classification was conducted using an inter-retrotransposon amplified polymorphism (IRAP) method based on the insertion polymorphism of a retrotransposon, CIRE1, identified in C. sinensis. The objective of this study was to evaluate the applicability of the IRAP method for citrus classification. The constructed dendrogram showed that the 145 accessions and two outgroup species were successfully classified into five major clades. A large number of C. sinensis accessions were divided into three traditional groups, navel orange, sweet orange, and blood orange, almost corresponding to the sub-clades in the dendrogram. Several other accessions belonging to the same species, and also many hybrid cultivars from crossbreeding, were localized into the respective sub-clades or near positions in the dendrogram. Several unclassified accessions could also be located in the dendrogram, suggesting novel relationships with other accessions. It was concluded that the IRAP method based on CIRE1 insertion polymorphism was suitable for the classification of citrus from a molecular point of view.

scholarly journals Volumetric Density-Equalizing Reference Map with Applications

2021 ◽  
Vol 86 (3) ◽  
Author(s):  
Gary P. T. Choi ◽  
Chris H. Rycroft
Keyword(s):  
Volumetric Density ◽  
Reference Map

Organizing Search Results with a Reference Map

2012 ◽  
Vol 18 (12) ◽  
pp. 2546-2555 ◽  
Author(s):  
Arlind Nocaj ◽  
Ulrik Brandes
Keyword(s):  
Search Results ◽  
Reference Map

Construction of an intra-specific sweet cherry (Prunus avium L.) genetic linkage map and synteny analysis with the Prunus reference map

2008 ◽  
Vol 4 (4) ◽  
pp. 897-910 ◽  
Author(s):  
James W. Olmstead ◽  
Audrey M. Sebolt ◽  
Antonio Cabrera ◽  
Suneth S. Sooriyapathirana ◽  
Sue Hammar ◽  
...  
Keyword(s):  
Linkage Map ◽  
Genetic Linkage ◽  
Sweet Cherry ◽  
Genetic Linkage Map ◽  
Prunus Avium ◽  
Synteny Analysis ◽  
Reference Map ◽  
Prunus Avium L

Evidence for Common Ancestral Origin of a Recurring BRCA1 Genomic Rearrangement Identified in High-Risk Hispanic Families

2007 ◽  
Vol 16 (8) ◽  
pp. 1615-1620 ◽  
Author(s):  
Jeffrey N. Weitzel ◽  
Veronica I. Lagos ◽  
Josef S. Herzog ◽  
Thaddeus Judkins ◽  
Brant Hendrickson ◽  
...  
Keyword(s):  
High Risk ◽  
Genomic Rearrangement ◽  
Hispanic Families ◽  
Ancestral Origin

A proteome reference map forVibrio cholerae El Tor

PROTEOMICS ◽  
2004 ◽  
Vol 4 (5) ◽  
pp. 1491-1504 ◽  
Author(s):  
Ana Coelho ◽  
Eidy de Oliveira Santos ◽  
Mauro Luiz da Hora Faria ◽  
Daniela Palermo de Carvalho ◽  
Marcia Regina Soares ◽  
...  
Keyword(s):  
Reference Map ◽  
El Tor

SINE insertion polymorphism on the X chromosome differentiates Anopheles gambiae molecular forms

2005 ◽  
Vol 14 (4) ◽  
pp. 353-363 ◽  
Author(s):  
M. J. Barnes ◽  
N. F. Lobo ◽  
M. B. Coulibaly ◽  
N'F. Sagnon ◽  
C. Costantini ◽  
...  
Keyword(s):  
Anopheles Gambiae ◽  
X Chromosome ◽  
Molecular Forms ◽  
Insertion Polymorphism ◽  
Sine Insertion
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