Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes

Author(s):  
Sagi Snir ◽  
Lior Pachter
2009 ◽  
Vol 19 (7) ◽  
pp. 1153-1164 ◽  
Author(s):  
E. M. Kvikstad ◽  
F. Chiaromonte ◽  
K. D. Makova

2013 ◽  
Vol 2013 ◽  
pp. 1-14 ◽  
Author(s):  
Maria S. Krasnikova ◽  
Denis V. Goryunov ◽  
Alexey V. Troitsky ◽  
Andrey G. Solovyev ◽  
Lydmila V. Ozerova ◽  
...  

PCR-based approach was used as a phylogenetic profiling tool to probe genomic DNA samples from representatives of evolutionary distant moss taxa, namely, classes Bryopsida, Tetraphidopsida, Polytrichopsida, Andreaeopsida, and Sphagnopsida. We found relatives of allPhyscomitrella patensmiR390 and TAS3-like loci in these plant taxa excluding Sphagnopsida. Importantly, cloning and sequencing ofMarchantia polymorphagenomic DNA showed miR390 and TAS3-like sequences which were also found among genomic reads ofM. polymorphaat NCBI database. Our data suggest that the ancient plant miR390-dependent TAS molecular machinery firstly evolved to target AP2-like mRNAs in Marchantiophyta and only then both ARF- and AP2-specific mRNAs in mosses. The presented analysis shows that moss TAS3 families may undergone losses of tasiAP2 sites during evolution toward ferns and seed plants. These data confirm that miR390-guided genes coding for ARF- and AP2-specific ta-siRNAs have been gradually changed during land plant evolution.


2004 ◽  
Vol 4 (4) ◽  
pp. 309-319 ◽  
Author(s):  
Julian C. Rayner ◽  
Curtis S. Huber ◽  
Dmitry Feldman ◽  
Paul Ingravallo ◽  
Mary R. Galinski ◽  
...  

2013 ◽  
Vol 9 (1) ◽  
pp. 692 ◽  
Author(s):  
Yuval Tabach ◽  
Tamar Golan ◽  
Abrahan Hernández‐Hernández ◽  
Arielle R Messer ◽  
Tomoyuki Fukuda ◽  
...  

2005 ◽  
Vol 18 (5-6) ◽  
pp. 835-842 ◽  
Author(s):  
Derong Liu ◽  
Xiaoxu Xiong ◽  
Zeng-Guang Hou ◽  
Bhaskar DasGupta

Sign in / Sign up

Export Citation Format

Share Document