Polymorphic Insertions and Deletions in Parabasalian Enolase Genes

2004 ◽  
Vol 58 (5) ◽  
pp. 550-556 ◽  
Author(s):  
Patrick J. Keeling
2009 ◽  
Vol 19 (7) ◽  
pp. 1153-1164 ◽  
Author(s):  
E. M. Kvikstad ◽  
F. Chiaromonte ◽  
K. D. Makova

2004 ◽  
Vol 4 (4) ◽  
pp. 309-319 ◽  
Author(s):  
Julian C. Rayner ◽  
Curtis S. Huber ◽  
Dmitry Feldman ◽  
Paul Ingravallo ◽  
Mary R. Galinski ◽  
...  

2005 ◽  
Vol 18 (5-6) ◽  
pp. 835-842 ◽  
Author(s):  
Derong Liu ◽  
Xiaoxu Xiong ◽  
Zeng-Guang Hou ◽  
Bhaskar DasGupta

2021 ◽  
Vol 70 ◽  
pp. 1335-1371
Author(s):  
Giuseppe De Giacomo ◽  
Xavier Oriol ◽  
Riccardo Rosati ◽  
Domenico Fabio Savo

In this paper we study instance-level update in DL-LiteA , a well-known description logic that influenced the OWL 2 QL standard. Instance-level update regards insertions and deletions in the ABox of an ontology. In particular we focus on formula-based approaches to instance-level update. We show that DL-LiteA , which is well-known for enjoying first-order rewritability of query answering, enjoys a first-order rewritability property also for instance-level update. That is, every update can be reformulated into a set of insertion and deletion instructions computable through a non-recursive Datalog program with negation. Such a program is readily translatable into a first-order query over the ABox considered as a database, and hence into SQL. By exploiting this result, we implement an update component for DL-LiteA-based systems and perform some experiments showing that the approach works in practice.


2020 ◽  
Author(s):  
David Heller ◽  
Martin Vingron

AbstractMotivationWith the availability of new sequencing technologies, the generation of haplotype-resolved genome assemblies up to chromosome scale has become feasible. These assemblies capture the complete genetic information of both parental haplotypes, increase structural variant (SV) calling sensitivity and enable direct genotyping and phasing of SVs. Yet, existing SV callers are designed for haploid genome assemblies only, do not support genotyping or detect only a limited set of SV classes.ResultsWe introduce our method SVIM-asm for the detection and genotyping of six common classes of SVs from haploid and diploid genome assemblies. Compared against the only other existing SV caller for diploid assemblies, DipCall, SVIM-asm detects more SV classes and reached higher F1 scores for the detection of insertions and deletions on two recently published assemblies of the HG002 individual.Availability and ImplementationSVIM-asm has been implemented in Python and can be easily installed via bioconda. Its source code is available at github.com/eldariont/[email protected] informationSupplementary data are available online.


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