Packaging DNA into Chromosomes: How Do the Long Threads of DNA Fit into the Small Interphase Nucleus?

2013 ◽  
pp. 111-129 ◽  
Author(s):  
Charles C. Tseng ◽  
Xiaoli Yang
Keyword(s):  
Interphase Nucleus

High-resolution nucleic acid sequence mapping via in situ hybridization at the Electron Microscope level

1995 ◽  
Vol 53 ◽  
pp. 752-753
Author(s):  
B.A. Hamkalo ◽  
S. Narayanswami ◽  
A.P. Kausch
Keyword(s):  
Nucleic Acid ◽  
Interphase Nucleus ◽  
Genome Mapping ◽  
Precise Location ◽  
Electron Microscope Level ◽  
Rna Sequences ◽  
Fundamental Interest ◽  
Whole Cells ◽  
Dna And Rna

The availability of nonradioactive methods to label nucleic acids an the resultant rapid and greater sensitivity of detection has catapulted the technique of in situ hybridization to become the method of choice to locate of specific DNA and RNA sequences on chromosomes and in whole cells in cytological preparations in many areas of biology. It is being applied to problems of fundamental interest to basic cell and molecular biologists such as the organization of the interphase nucleus in the context of putative functional domains; it is making major contributions to genome mapping efforts; and it is being applied to the analysis of clinical specimens. Although fluorescence detection of nucleic acid hybrids is routinely used, certain questions require greater resolution. For example, very closely linked sequences may not be separable using fluorescence; the precise location of sequences with respect to chromosome structures may be below the resolution of light microscopy(LM); and the relative positions of sequences on very small chromosomes may not be feasible.

scholarly journals New Data on Organization and Spatial Localization of B-Chromosomes in Cell Nuclei of the Yellow-Necked Mouse Apodemus flavicollis

Cells ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1819
Author(s):  
Tatyana Karamysheva ◽  
Svetlana Romanenko ◽  
Alexey Makunin ◽  
Marija Rajičić ◽  
Alexey Bogdanov ◽  
...  
Keyword(s):  
In Situ Hybridization ◽  
Sex Chromosomes ◽  
Interphase Nucleus ◽  
Spatial Organization ◽  
Three Dimensional ◽  
Dna Probes ◽  
B Chromosomes ◽  
Apodemus Flavicollis ◽  
Yellow Necked Mouse

The gene composition, function and evolution of B-chromosomes (Bs) have been actively discussed in recent years. However, the additional genomic elements are still enigmatic. One of Bs mysteries is their spatial organization in the interphase nucleus. It is known that heterochromatic compartments are not randomly localized in a nucleus. The purpose of this work was to study the organization and three-dimensional spatial arrangement of Bs in the interphase nucleus. Using microdissection of Bs and autosome centromeric heterochromatic regions of the yellow-necked mouse (Apodemus flavicollis) we obtained DNA probes for further two-dimensional (2D)- and three-dimensional (3D)- fluorescence in situ hybridization (FISH) studies. Simultaneous in situ hybridization of obtained here B-specific DNA probes and autosomal C-positive pericentromeric region-specific probes further corroborated the previously stated hypothesis about the pseudoautosomal origin of the additional chromosomes of this species. Analysis of the spatial organization of the Bs demonstrated the peripheral location of B-specific chromatin within the interphase nucleus and feasible contact with the nuclear envelope (similarly to pericentromeric regions of autosomes and sex chromosomes). It is assumed that such interaction is essential for the regulation of nuclear architecture. It also points out that Bs may follow the same mechanism as sex chromosomes to avoid a meiotic checkpoint.

An Ultrastructural and Radio-Autographic Study of the Evolution of the Interphase Nucleus in Plant Meristematic Cells (Allium Porrum)

1974 ◽  
Vol 14 (2) ◽  
pp. 263-287
Author(s):  
J. G. LAFONTAINE ◽  
A. LORD
Keyword(s):  
Interphase Nucleus ◽  
Structural Changes ◽  
Tritiated Thymidine ◽  
Light And Electron Microscopy ◽  
Allium Porrum ◽  
Meristematic Cells ◽  
Fibrillar Material ◽  
Nuclear Structures ◽  
S Period ◽  
Dense Chromatin

Radioautography under both light and electron microscopy was exploited to investigate the structural changes of the chromatin reticulum which characterizes the interphase nucleus of a number of plants. Allium porrum meristematic plant cells were used for this purpose. In this species, the telophase chromosomes uncoil into dense strands which, during the G1 period, gradually give rise to a coarse reticulum. There then follows an extensive unravelling of portions of these strands, and high-resolution radioautography reveals that labelling with tritiated thymidine predominantly occurs over zones of the nucleus consisting of diffuse fine fibrillar material. As the S-period progresses, a chromatin reticulum reappears throughout the nuclear cavity, the tortuous strands being approximately 0.25 µm in diameter. Most of the radioautographic grains still remain over the light nucleoplasmic areas but a number of these are now located on the outermost portion of the dense chromatin profiles. By the end of the S-period, the chromatin strands are slightly thicker (ca. 0.3 µm) and form a looser reticulum. Labelling has decreased noticeably in nuclei of that period, the radioautographic grains being grouped into clusters resting over more or less spherical regions of the chromatin reticulum. Judging from their localization at the surface of the nucleolus or close to the nuclear envelope, these structures correspond to chromocentres. The additional interesting finding that such nuclear structures appear much less compactly organized strongly suggests that chromocentres undergo important conformational modifications during duplication of their DNA.

Non-B DNA structures spatially and sequence-specifically associated with individual centromeres in the human interphase nucleus

2000 ◽  
pp. 57-69 ◽  
Author(s):  
Mizuki Ohno ◽  
Toyoaki Tenzen ◽  
Yoshihisa Watanabe ◽  
Tetsushi Yamagata ◽  
Shigehiko Kanaya ◽  
...  
Keyword(s):  
Interphase Nucleus ◽  
Dna Structures

Experiments on blocking and unblocking of first meiotic metaphase in eggs of the parthenogenetic stick insect Carausius morosus Br. (Phasmida, Insecta)

Development ◽  
1976 ◽  
Vol 36 (2) ◽  
pp. 383-394
Author(s):  
L. P. Pijnacker ◽  
M. A. Ferwerda
Keyword(s):  
Interphase Nucleus ◽  
Stick Insect ◽  
Meiotic Metaphase ◽  
Anterior Region ◽  
Egg Cell ◽  
Metaphase Chromosomes ◽  
Carausius Morosus ◽  
Cytoplasmic Factors ◽  
Activating Agent ◽  
Nuclear Behaviour

The eggs of the parthenogenetic stick insect Carausius morosus, which remain arrested in first meiotic metaphase until oviposition, must be activated in order to develop. The activating agent is oxygen from the air, which enters the egg cell through the micropyle. An exposure shorter than one minute is sufficient to release the blockage. In non-activated (micropyle-less) eggs the first metaphase chromosomes either degenerate or change into an interphase nucleus. This nucleus polyploidizes by endoreduplication, and then either degenerates or multiplies by amitosis. Similarly more generations of nuclei may arise resulting in a chaotic development. These nuclei survive better in the anterior region of the egg. The question of whether the cytoplasmic factors which control nuclear behaviour, also operate in eggs of C. morosus is discussed.

The Interphase Nucleus

The Cell ◽  
1961 ◽  
pp. 677-770 ◽  
Author(s):  
ALFRED E. MIRSKY ◽  
SYOZO OSAWA
Keyword(s):  
Interphase Nucleus

Heterochromatic regions in Japanese quail chromosomes: comprehensive molecular-cytogenetic characterization and 3D mapping in interphase nucleus

2018 ◽  
Vol 27 (3) ◽  
pp. 253-270 ◽  
Author(s):  
Anna Zlotina ◽  
Antonina Maslova ◽  
Nadezda Kosyakova ◽  
Ahmed B. Hamid Al-Rikabi ◽  
Thomas Liehr ◽  
...  
Keyword(s):  
Japanese Quail ◽  
Interphase Nucleus ◽  
3D Mapping ◽  
Molecular Cytogenetic ◽  
Cytogenetic Characterization

scholarly journals PROTEINS IN NUCLEOCYTOPLASMIC INTERACTIONS

1968 ◽  
Vol 39 (2) ◽  
pp. 404-414 ◽  
Author(s):  
David Prescott ◽  
Lester Goldstein
Keyword(s):  
Binding Sites ◽  
Interphase Nucleus ◽  
Nuclear Protein ◽  
Protein A ◽  
Amoeba Proteus ◽  
Nuclear Proteins ◽  
Nuclear Transplantation ◽  
Amino Acid Labeling ◽  
Turn Over ◽  
Nucleocytoplasmic Interactions

The behavior of nuclear proteins in Amoeba proteus was studied by tritiated amino acid labeling, nuclear transplantation, and cytoplasmic amputation. During prophase at least 77% (but probably over 95%) of the nuclear proteins is released to the cytoplasm. These same proteins return to the nucleus within the first 3 hr of interphase. When cytoplasm is amputated from an ameba in mitosis (shen the nuclear proteins are in the cytoplasm), the resultant daughter nuclei are depleted in the labeled nuclear proteins. The degree of depletion is less than proportional to the amount of cytoplasm removed because a portion of rapidly migrating protein (a nuclear protein that is normally shuttling between nucleus and cytoplasm and is thus also present in the cytoplasm) which would normally remain in the cytoplasm is taken up by the reconstituting daughter nuclei. Cytoplasmic fragments cut from mitotic cells are enriched in both major classes of nuclear proteins, i.e. rapidly migrating protein and slow turn-over protein. An interphase nucleus implanted into such an enucleated cell acquires from the cytoplasm essentially all of the excess nuclear proteins of both classes. The data indicate that there is a lack of binding sites in the cytoplasm for the rapidly migrating nuclear protein. The quantitative aspects of the distribution of rapidly migrating protein between the nucleus and the cytoplasm indicate that the distribution is governed primarily by factors within the nucleus.

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