Classification of Plant Lectins in Families Of Structurally and Evolutionary Related Proteins

Author(s):  
Willy J. Peumans ◽  
J. M. van Damme ◽  
Annick Barre ◽  
Pierre Rougé
Author(s):  
Mohamed M. Amin

Neurodegenerative diseases (NDs) are characterized by specific dysfunction and damage of neurons related to pathologically changed proteins that deposit in the patient brain but also in peripheral organs. These proteins can be used for therapy or used as biomarkers. Except for a plethora of alterations revealed for dissimilar neurodegeneration-related proteins, amyloid-β, prion protein, TAR DNA-binding protein 43 (TDP-43, transactive response DNA binding protein 43 kDa), tau and α-synuclein, or fused in sarcoma protein (FUS), molecular classification of NDs depend on the full morphological assessment of protein deposits, their spreading in the brain, and their correspondence to clinical signs with specific genetic modifications. The current chapter represents the etiology of neurodegeneration, classification of NDs, concentrating on the maximum applicable biochemical and anatomical characteristics and most imperative NDs.


1998 ◽  
Vol 17 (6) ◽  
pp. 575-692 ◽  
Author(s):  
Els J. M. Van Damme ◽  
Willy J. Peumans ◽  
Annick Barre ◽  
Pierre Rougé

1999 ◽  
Vol 101 (1-3) ◽  
pp. 77-81
Author(s):  
B. Tallur ◽  
J. Nicolas ◽  
A. Froger ◽  
D. Thomas ◽  
C. Delamarche

Viruses ◽  
2019 ◽  
Vol 11 (2) ◽  
pp. 195 ◽  
Author(s):  
Cynthia Maria Chibani ◽  
Anton Farr ◽  
Sandra Klama ◽  
Sascha Dietrich ◽  
Heiko Liesegang

This work reports the method ClassiPhage to classify phage genomes using sequence derived taxonomic features. ClassiPhage uses a set of phage specific Hidden Markov Models (HMMs) generated from clusters of related proteins. The method was validated on all publicly available genomes of phages that are known to infect Vibrionaceae. The phages belong to the well-described phage families of Myoviridae, Podoviridae, Siphoviridae, and Inoviridae. The achieved classification is consistent with the assignments of the International Committee on Taxonomy of Viruses (ICTV), all tested phages were assigned to the corresponding group of the ICTV-database. In addition, 44 out of 58 genomes of Vibrio phages not yet classified could be assigned to a phage family. The remaining 14 genomes may represent phages of new families or subfamilies. Comparative genomics indicates that the ability of the approach to identify and classify phages is correlated to the conserved genomic organization. ClassiPhage classifies phages exclusively based on genome sequence data and can be applied on distinct phage genomes as well as on prophage regions within host genomes. Possible applications include (a) classifying phages from assembled metagenomes; and (b) the identification and classification of integrated prophages and the splitting of phage families into subfamilies.


2003 ◽  
Vol 333 (4) ◽  
pp. 781-815 ◽  
Author(s):  
Detlef D. Leipe ◽  
Eugene V. Koonin ◽  
L. Aravind
Keyword(s):  

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