One of the important unsolved problems related to the evolution of living conditions on Earth is the mechanism of the rapid transformation of the Black Sea from a shallow lake-type sea into a deep-water basin, the earth's crust in the central part of which does not have a granite layer. There is no explanation as to how “granite-free depressions” were formed at the bottom of the sea, which are currently covered by sediment. Investigations of these processes were started in the middle of the last century by scientists-geologists of the Institute of Oceanology of the Russian Academy of Sciences and its South. In this article, the authors propose a mechanism for the destruction of the earth's crust and the formation of depressions in the inner seas during the Messinian crisis.