An Optimization Algorithm Based on Harmony Search for RNA Secondary Structure Prediction

Harmony Search ◽

The Effect of Using Different Thermodynamic Models with Harmony Search Algorithm in the Accuracy of RNA Secondary Structure Prediction

2009 International Conference of Soft Computing and Pattern Recognition ◽

10.1109/socpar.2009.102 ◽

2009 ◽

Cited By ~ 1

Author(s):

Abdulqader M. Mohsen ◽

Ahamad Tajudin Khader ◽

Abdullatif Ghallab

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Search Algorithm ◽

Harmony Search ◽

Harmony Search Algorithm ◽

Thermodynamic Models ◽

RNA Secondary Structure Prediction with Pseudoknots using Chemical Reaction Optimization Algorithm

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2019.2936570 ◽

2019 ◽

pp. 1-1 ◽

Cited By ~ 1

Author(s):

Md. Rafiqul Islam ◽

Md. Shahidul Islam ◽

Nazmus Sakeef

Keyword(s):

Secondary Structure ◽

Chemical Reaction ◽

Optimization Algorithm ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Chemical Reaction Optimization ◽

Reaction Optimization

HSRNAFold: A harmony search algorithm for RNA secondary structure prediction based on minimum free energy

2008 International Conference on Innovations in Information Technology ◽

10.1109/innovations.2008.4781694 ◽

2008 ◽

Cited By ~ 2

Author(s):

Abdulqader M. Mohsen ◽

Ahamad Tajudin Khader ◽

Dhanesh Ramachandram

Keyword(s):

Free Energy ◽

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Search Algorithm ◽

Harmony Search ◽

Minimum Free Energy ◽

Harmony Search Algorithm ◽

RNA secondary structure prediction algorithm based on combinatorial optimization algorithm and SVMs method

Proceedings of the 10th World Congress on Intelligent Control and Automation ◽

10.1109/wcica.2012.6357971 ◽

2012 ◽

Author(s):

Jing-yuan He ◽

Chao Mu ◽

Hai-hun Huang

Keyword(s):

Combinatorial Optimization ◽

Secondary Structure ◽

Optimization Algorithm ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Prediction Algorithm ◽

Structure Prediction Algorithm

RNA secondary structure prediction using Fruit Fly Optimization Algorithm

2020 IEEE Region 10 Symposium (TENSYMP) ◽

10.1109/tensymp50017.2020.9230586 ◽

2020 ◽

Author(s):

Sajib Chatterjee ◽

Sayla Parvin Rabeya ◽

Setu Halder ◽

Madhab Mondal ◽

Farjana Yesmin Sujana

Keyword(s):

Secondary Structure ◽

Optimization Algorithm ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Fruit Fly ◽

Fruit Fly Optimization Algorithm ◽

Fruit Fly Optimization

Faculty Opinions recommendation of COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718010599.793476797 ◽

2013 ◽

Author(s):

Scott Silverman

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Prediction Method ◽

Secondary Structure Prediction Method

Structure Prediction Method ◽

A Discrete Hopfield Neural Network Based MIS Finding Algorithm for Stems Selecting and Its Application in RNA Secondary Structure Prediction

Chinese Journal of Computers ◽

10.3724/sp.j.1016.2008.00051 ◽

2009 ◽

Vol 31 (1) ◽

pp. 51-58

Author(s):

Qi LIU ◽

Yin ZHANG ◽

Xiu-Zi YE ◽

Rong-Dong YU

Keyword(s):

Neural Network ◽

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Hopfield Neural Network ◽

A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more

RNA ◽

10.1261/rna.030049.111 ◽

2011 ◽

Vol 18 (2) ◽

pp. 193-212 ◽

Cited By ~ 50

Author(s):

E. Rivas ◽

R. Lang ◽

S. R. Eddy

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Probabilistic Models ◽

Nearest Neighbor ◽

Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data

PLoS ONE ◽

10.1371/journal.pone.0166965 ◽

2016 ◽

Vol 11 (11) ◽

pp. e0166965 ◽

Cited By ~ 4

Author(s):

Soheila Montaseri ◽

Mohammad Ganjtabesh ◽

Fatemeh Zare-Mirakabad

Keyword(s):

Secondary Structure ◽

Evolutionary Algorithm ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Shape Data

RNA Secondary Structure Prediction and Gene Regulation by Small RNAs

Frontiers in Computational and Systems Biology - Computational Biology ◽

10.1007/978-1-84996-196-7_2 ◽

2010 ◽

pp. 19-37

Author(s):

Ye Ding

Keyword(s):

Gene Regulation ◽

Secondary Structure ◽

Small Rnas ◽

Structure Prediction ◽

Rna Secondary Structure ◽