Multi-class Segmentation of Organ at Risk from Abdominal CT Images: A Deep Learning Approach

2021 ◽  
pp. 425-434
Author(s):  
Muhammad Ibrahim Khalil ◽  
Mamoona Humayun ◽  
N. Z. Jhanjhi ◽  
M. N. Talib ◽  
Thamer A. Tabbakh
10.2196/26151 ◽  
2021 ◽  
Vol 23 (7) ◽  
pp. e26151
Author(s):  
Stanislav Nikolov ◽  
Sam Blackwell ◽  
Alexei Zverovitch ◽  
Ruheena Mendes ◽  
Michelle Livne ◽  
...  

Background Over half a million individuals are diagnosed with head and neck cancer each year globally. Radiotherapy is an important curative treatment for this disease, but it requires manual time to delineate radiosensitive organs at risk. This planning process can delay treatment while also introducing interoperator variability, resulting in downstream radiation dose differences. Although auto-segmentation algorithms offer a potentially time-saving solution, the challenges in defining, quantifying, and achieving expert performance remain. Objective Adopting a deep learning approach, we aim to demonstrate a 3D U-Net architecture that achieves expert-level performance in delineating 21 distinct head and neck organs at risk commonly segmented in clinical practice. Methods The model was trained on a data set of 663 deidentified computed tomography scans acquired in routine clinical practice and with both segmentations taken from clinical practice and segmentations created by experienced radiographers as part of this research, all in accordance with consensus organ at risk definitions. Results We demonstrated the model’s clinical applicability by assessing its performance on a test set of 21 computed tomography scans from clinical practice, each with 21 organs at risk segmented by 2 independent experts. We also introduced surface Dice similarity coefficient, a new metric for the comparison of organ delineation, to quantify the deviation between organ at risk surface contours rather than volumes, better reflecting the clinical task of correcting errors in automated organ segmentations. The model’s generalizability was then demonstrated on 2 distinct open-source data sets, reflecting different centers and countries to model training. Conclusions Deep learning is an effective and clinically applicable technique for the segmentation of the head and neck anatomy for radiotherapy. With appropriate validation studies and regulatory approvals, this system could improve the efficiency, consistency, and safety of radiotherapy pathways.


Author(s):  
Faridoddin Shariaty ◽  
Vitalii Pavlov ◽  
Elena Velichko ◽  
Tatiana Pervunina ◽  
Mahdi Orooji

2020 ◽  
Vol 30 (12) ◽  
pp. 6517-6527 ◽  
Author(s):  
Qianqian Ni ◽  
Zhi Yuan Sun ◽  
Li Qi ◽  
Wen Chen ◽  
Yi Yang ◽  
...  

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Brent van der Heyden ◽  
Patrick Wohlfahrt ◽  
Daniëlle B. P. Eekers ◽  
Christian Richter ◽  
Karin Terhaag ◽  
...  

2019 ◽  
Vol 136 ◽  
pp. 56-63 ◽  
Author(s):  
Samaneh Kazemifar ◽  
Sarah McGuire ◽  
Robert Timmerman ◽  
Zabi Wardak ◽  
Dan Nguyen ◽  
...  

2019 ◽  
Vol 38 (1) ◽  
pp. 156-166 ◽  
Author(s):  
Sarah E. Gerard ◽  
Taylor J. Patton ◽  
Gary E. Christensen ◽  
John E. Bayouth ◽  
Joseph M. Reinhardt

2020 ◽  
Vol 152 ◽  
pp. S343-S344
Author(s):  
H. Nijhuis ◽  
W. Van Rooij ◽  
V. Gregoire ◽  
J. Overgaard ◽  
B. Slotman ◽  
...  

2021 ◽  
Vol 70 ◽  
pp. 102976
Author(s):  
Shao-di Yang ◽  
Yu-qian Zhao ◽  
Zhen Yang ◽  
Yan-jin Wang ◽  
Fan Zhang ◽  
...  

IEEE Access ◽  
2019 ◽  
Vol 7 ◽  
pp. 144591-144602 ◽  
Author(s):  
Yueyue Wang ◽  
Liang Zhao ◽  
Manning Wang ◽  
Zhijian Song

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