DNA sequence compression using RP/GP2 method with information storage and security

2019 ◽  
Vol 26 (7) ◽  
pp. 2159-2172
Author(s):  
Syed Mahamud Hossein ◽  
Debashis De ◽  
Pradeep Kumar Das Mohapatra
Keyword(s):  
Dna Sequence ◽  
Information Storage ◽  
Dna Sequence Compression ◽  
Sequence Compression

SBVRLDNAComp:An Effective DNA Sequence Compression Algorithm

2015 ◽  
Vol 5 (4) ◽  
pp. 73-85 ◽  
Author(s):  
Subhankar Roy ◽  
Akash Bhagot ◽  
Kumari Annapurna Sharma ◽  
Sunirmal Khatua
Keyword(s):  
Dna Sequence ◽  
Compression Algorithm ◽  
Dna Sequence Compression ◽  
Sequence Compression

scholarly journals An Optimal Seed Based Compression Algorithm for DNA Sequences

2016 ◽  
Vol 2016 ◽  
pp. 1-7 ◽  
Author(s):  
Pamela Vinitha Eric ◽  
Gopakumar Gopalakrishnan ◽  
Muralikrishnan Karunakaran
Keyword(s):  
Dna Sequence ◽  
Dna Sequences ◽  
Lossless Compression ◽  
Compression Algorithm ◽  
Compression Scheme ◽  
Substitution Method ◽  
Compression Algorithms ◽  
Dna Sequence Compression ◽  
Sequence Compression ◽  
Better Than

This paper proposes a seed based lossless compression algorithm to compress a DNA sequence which uses a substitution method that is similar to the LempelZiv compression scheme. The proposed method exploits the repetition structures that are inherent in DNA sequences by creating an offline dictionary which contains all such repeats along with the details of mismatches. By ensuring that only promising mismatches are allowed, the method achieves a compression ratio that is at par or better than the existing lossless DNA sequence compression algorithms.

Self-configuration single particle optimizer for DNA sequence compression

2012 ◽  
Vol 17 (4) ◽  
pp. 675-682 ◽  
Author(s):  
Zhen Ji ◽  
Jiarui Zhou ◽  
Zexuan Zhu ◽  
Siping Chen
Keyword(s):  
Dna Sequence ◽  
Single Particle ◽  
Dna Sequence Compression ◽  
Sequence Compression
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