scholarly journals A CON-based NMR assignment strategy for pro-rich intrinsically disordered proteins with low signal dispersion: the C-terminal domain of histone H1.0 as a case study

2018 ◽  
Vol 72 (3-4) ◽  
pp. 139-148 ◽  
Author(s):  
Belén Chaves-Arquero ◽  
David Pantoja-Uceda ◽  
Alicia Roque ◽  
Inmaculada Ponte ◽  
Pedro Suau ◽  
...  
Biomolecules ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 1084 ◽  
Author(s):  
Chana G. Sokolik ◽  
Nasrin Qassem ◽  
Jordan H. Chill

WASp-interacting protein (WIP), a regulator of actin cytoskeleton assembly and remodeling, is a cellular multi-tasker and a key member of a network of protein–protein interactions, with significant impact on health and disease. Here, we attempt to complement the well-established understanding of WIP function from cell biology studies, summarized in several reviews, with a structural description of WIP interactions, highlighting works that present a molecular view of WIP’s protein–protein interactions. This provides a deeper understanding of the mechanisms by which WIP mediates its biological functions. The fully disordered WIP also serves as an intriguing example of how intrinsically disordered proteins (IDPs) exert their function. WIP consists of consecutive small functional domains and motifs that interact with a host of cellular partners, with a striking preponderance of proline-rich motif capable of interactions with several well-recognized binding partners; indeed, over 30% of the WIP primary structure are proline residues. We focus on the binding motifs and binding interfaces of three important WIP segments, the actin-binding N-terminal domain, the central domain that binds SH3 domains of various interaction partners, and the WASp-binding C-terminal domain. Beyond the obvious importance of a more fundamental understanding of the biology of this central cellular player, this approach carries an immediate and highly beneficial effect on drug-design efforts targeting WIP and its binding partners. These factors make the value of such structural studies, challenging as they are, readily apparent.


2004 ◽  
Vol 99 (2) ◽  
pp. 157-167 ◽  
Author(s):  
Jean-Marie Bourhis ◽  
Kenth Johansson ◽  
Véronique Receveur-Bréchot ◽  
Christopher J. Oldfield ◽  
Keith A. Dunker ◽  
...  

2020 ◽  
Vol 48 (10) ◽  
pp. 5318-5331 ◽  
Author(s):  
Akshay Sridhar ◽  
Modesto Orozco ◽  
Rosana Collepardo-Guevara

Abstract Intrinsically disordered proteins are crucial elements of chromatin heterogenous organization. While disorder in the histone tails enables a large variation of inter-nucleosome arrangements, disorder within the chromatin-binding proteins facilitates promiscuous binding to a wide range of different molecular targets, consistent with structural heterogeneity. Among the partially disordered chromatin-binding proteins, the H1 linker histone influences a myriad of chromatin characteristics including compaction, nucleosome spacing, transcription regulation, and the recruitment of other chromatin regulating proteins. Although it is now established that the long C-terminal domain (CTD) of H1 remains disordered upon nucleosome binding and that such disorder favours chromatin fluidity, the structural behaviour and thereby the role/function of the N-terminal domain (NTD) within chromatin is yet unresolved. On the basis of microsecond-long parallel-tempering metadynamics and temperature-replica exchange atomistic molecular dynamics simulations of different H1 NTD subtypes, we demonstrate that the NTD is completely unstructured in solution but undergoes an important disorder-to-order transition upon nucleosome binding: it forms a helix that enhances its DNA binding ability. Further, we show that the helical propensity of the H1 NTD is subtype-dependent and correlates with the experimentally observed binding affinity of H1 subtypes, suggesting an important functional implication of this disorder-to-order transition.


2014 ◽  
Vol 60 (4) ◽  
pp. 209-218 ◽  
Author(s):  
Alessandro Piai ◽  
Tomáš Hošek ◽  
Leonardo Gonnelli ◽  
Anna Zawadzka-Kazimierczuk ◽  
Wiktor Koźmiński ◽  
...  

Author(s):  
Anhui Wang ◽  
Xiangda Peng ◽  
Yan Li ◽  
DL Zhang ◽  
Zhichao Zhang ◽  
...  

Intrinsically disordered proteins (IDPs) are a group of proteins that lack well-defined structures under native conditions and carry out crucial physiological functions in various biochemical pathways. Due to the heterogeneous...


ChemPhysChem ◽  
2015 ◽  
Vol 16 (4) ◽  
pp. 739-746 ◽  
Author(s):  
Nishit Goradia ◽  
Christoph Wiedemann ◽  
Christian Herbst ◽  
Matthias Görlach ◽  
Stefan H. Heinemann ◽  
...  

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