scholarly journals Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures

2020 ◽  
Vol 181 (6) ◽  
pp. 2257-2303 ◽  
Author(s):  
Jan Maas ◽  
Alexander Mielke

AbstractWe consider various modeling levels for spatially homogeneous chemical reaction systems, namely the chemical master equation, the chemical Langevin dynamics, and the reaction-rate equation. Throughout we restrict our study to the case where the microscopic system satisfies the detailed-balance condition. The latter allows us to enrich the systems with a gradient structure, i.e. the evolution is given by a gradient-flow equation. We present the arising links between the associated gradient structures that are driven by the relative entropy of the detailed-balance steady state. The limit of large volumes is studied in the sense of evolutionary $$\Gamma $$ Γ -convergence of gradient flows. Moreover, we use the gradient structures to derive hybrid models for coupling different modeling levels.

2015 ◽  
Vol 73 ◽  
pp. 23-33 ◽  
Author(s):  
D. Rodrigues ◽  
S. Srinivasan ◽  
J. Billeter ◽  
D. Bonvin

2018 ◽  
Vol 114 ◽  
pp. 296-305 ◽  
Author(s):  
Julien Billeter ◽  
Diogo Rodrigues ◽  
Sriniketh Srinivasan ◽  
Michael Amrhein ◽  
Dominique Bonvin

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