Solving a Generalized Distance Geometry Problem for Protein Structure Determination

2011 ◽  
Vol 73 (12) ◽  
pp. 2809-2836 ◽  
Author(s):  
Atilla Sit ◽  
Zhijun Wu
Keyword(s):  
Protein Structure ◽  
Structure Determination ◽  
Distance Geometry ◽  
Protein Structure Determination ◽  
Geometry Problem ◽  
Distance Geometry Problem ◽  
Generalized Distance

scholarly journals Homology Initialization for Protein Structure Determination via Distance Geometry

2020 ◽  
Author(s):  
Abiy Tasissa ◽  
Rongjie Lai ◽  
Chunyu Wang
Keyword(s):  
Protein Structure ◽  
Structure Determination ◽  
Numerical Experiments ◽  
Euclidean Distance ◽  
Partial Information ◽  
Distance Geometry ◽  
Protein Structure Determination ◽  
Geometry Problem ◽  
Distance Geometry Problem ◽  
Euclidean Distance Geometry

AbstractThe problem of finding the configuration of points given partial information on pairwise inter-point distances, the Euclidean distance geometry problem, appears in multiple applications. In this paper, we propose an approach that integrates homology modeling and a nonconvex distance geometry algorithm for the protein structure determination problem. Preliminary numerical experiments show promising results.

A constrained interval approach to the generalized distance geometry problem

2018 ◽  
Vol 14 (2) ◽  
pp. 483-492
Author(s):  
Luiz Leduino de Salles Neto ◽  
Carlile Lavor ◽  
Weldon Lodwick
Keyword(s):  
Distance Geometry ◽  
Interval Approach ◽  
Geometry Problem ◽  
Distance Geometry Problem ◽  
Generalized Distance
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