Discovering protein complexes from protein-protein interaction data by dense subgraph

Wuhan University Journal of Natural Sciences ◽

10.1007/s11859-011-0712-4 ◽

2011 ◽

Vol 16 (1) ◽

pp. 64-68

Author(s):

Bin Liu ◽

Jing Liu

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Dense Subgraph ◽

Protein Protein Interaction

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High throughput protein-protein interaction data: clues for the architecture of protein complexes

Proteome Science ◽

10.1186/1477-5956-6-32 ◽

2008 ◽

Vol 6 (1) ◽

pp. 32 ◽

Author(s):

James R Krycer ◽

Chi Pang ◽

Marc R Wilkins

Keyword(s):

High Throughput ◽

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Protein Protein Interaction

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Discovering Protein Complexes from Protein-Protein Interaction Data by Local Cluster Detecting Algorithm

Fourth International Conference on Fuzzy Systems and Knowledge Discovery (FSKD 2007) ◽

10.1109/fskd.2007.257 ◽

2007 ◽

Author(s):

Juan Liu ◽

Bin Liu ◽

Deyi Li

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Local Cluster ◽

Protein Protein Interaction

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Identifying Protein Complexes in Protein-protein Interaction Data Using Graph Convolutional Network

IEEE Access ◽

10.1109/access.2021.3110845 ◽

2021 ◽

pp. 1-1

Author(s):

Nazar Zaki ◽

Harsh Singh ◽

Elfadil A. Mohamed

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Convolutional Network ◽

Protein Protein Interaction

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A Survey on Identification of Protein Complexes in Protein–protein Interaction Data: Methods and Evaluation

SpringerBriefs in Applied Sciences and Technology - Computational Intelligence Techniques for Comparative Genomics ◽

10.1007/978-981-287-338-5_5 ◽

2014 ◽

pp. 57-72 ◽

Author(s):

Praveen Tumuluru ◽

Bhramaramba Ravi ◽

Sujatha Ch

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Protein Protein Interaction

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Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2012.20 ◽

2012 ◽

Vol 9 (3) ◽

pp. 857-870 ◽

Author(s):

Xiao-Fei Zhang ◽

Dao-Qing Dai ◽

Xiao-Xin Li

Keyword(s):

Network Model ◽

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Protein Protein Interaction

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Faculty Opinions recommendation of Analyzing yeast protein-protein interaction data obtained from different sources.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1010262.240599 ◽

2004 ◽

Author(s):

Golan Yona

Keyword(s):

Protein Interaction ◽

Protein Interaction Data ◽

Interaction Data ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Different Sources

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Prediction of Protein Functions from Protein-Protein Interaction Data Based on a New Measure of Network Betweenness

2010 4th International Conference on Bioinformatics and Biomedical Engineering ◽

10.1109/icbbe.2010.5515034 ◽

2010 ◽

Author(s):

Naifang Su ◽

Lin Wang ◽

Yufu Wang ◽

Minping Qian ◽

Minghua Deng

Keyword(s):

Protein Interaction ◽

Protein Interaction Data ◽

Interaction Data ◽

Protein Protein Interaction ◽

Protein Functions

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Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data

Journal of Computational Biology ◽

10.1089/cmb.2005.12.835 ◽

2005 ◽

Vol 12 (6) ◽

pp. 835-846 ◽

Author(s):

Roded Sharan ◽

Trey Ideker ◽

Brian Kelley ◽

Ron Shamir ◽

Richard M. Karp

Keyword(s):

Comparative Analysis ◽

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Data ◽

Interaction Data ◽

Bacterial Protein

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Iteration method for detecting disease genes in terms of the integration of the cellular compartment information with the protein-protein interaction data

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2017.088140 ◽

2017 ◽

Vol 18 (4) ◽

pp. 315

Author(s):

Xiwei Tang ◽

Wei Peng ◽

Minzhu Xie

Keyword(s):

Protein Interaction ◽

Iteration Method ◽

Protein Interaction Data ◽

Disease Genes ◽

Interaction Data ◽

Cellular Compartment ◽

Protein Protein Interaction

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Approach of the functional evolution of duplicated genes in Saccharomyces cerevisiae using a new classification method based on protein-protein interaction data

Genome Evolution ◽

10.1007/978-94-010-0263-9_21 ◽

2003 ◽

pp. 213-224

Author(s):

Christine Brun ◽

Alain Guénoche ◽

Bernard Jacq

Keyword(s):

Saccharomyces Cerevisiae ◽

Protein Interaction ◽

Classification Method ◽

Protein Interaction Data ◽

Interaction Data ◽

Duplicated Genes ◽

Functional Evolution ◽

New Classification ◽

Protein Protein Interaction

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