scholarly journals Homeobox B8 Targets Sterile Alpha Motif Domain-Containing Protein 9 and Drives Glioma Progression

2019 ◽  
Vol 36 (4) ◽  
pp. 359-371 ◽  
Author(s):  
Wenping Ma ◽  
Hongze Jin ◽  
Wenjie Liu ◽  
Xiaojuan Li ◽  
Xingang Zhou ◽  
...  
BMC Genomics ◽  
2007 ◽  
Vol 8 (1) ◽  
pp. 92 ◽  
Author(s):  
Catherine F Li ◽  
Jeffrey R MacDonald ◽  
Robert Y Wei ◽  
Jocelyn Ray ◽  
Kimberly Lau ◽  
...  

2018 ◽  
Vol 115 (20) ◽  
pp. E4690-E4699 ◽  
Author(s):  
Courtney A. Hollender ◽  
Thierry Pascal ◽  
Amy Tabb ◽  
Toto Hadiarto ◽  
Chinnathambi Srinivasan ◽  
...  

Plant shoots typically grow upward in opposition to the pull of gravity. However, exceptions exist throughout the plant kingdom. Most conspicuous are trees with weeping or pendulous branches. While such trees have long been cultivated and appreciated for their ornamental value, the molecular basis behind the weeping habit is not known. Here, we characterized a weeping tree phenotype in Prunus persica (peach) and identified the underlying genetic mutation using a genomic sequencing approach. Weeping peach tree shoots exhibited a downward elliptical growth pattern and did not exhibit an upward bending in response to 90° reorientation. The causative allele was found to be an uncharacterized gene, Ppa013325, having a 1.8-Kb deletion spanning the 5′ end. This gene, dubbed WEEP, was predominantly expressed in phloem tissues and encodes a highly conserved 129-amino acid protein containing a sterile alpha motif (SAM) domain. Silencing WEEP in the related tree species Prunus domestica (plum) resulted in more outward, downward, and wandering shoot orientations compared to standard trees, supporting a role for WEEP in directing lateral shoot growth in trees. This previously unknown regulator of branch orientation, which may also be a regulator of gravity perception or response, provides insights into our understanding of how tree branches grow in opposition to gravity and could serve as a critical target for manipulating tree architecture for improved tree shape in agricultural and horticulture applications.


2011 ◽  
Vol 20 (10) ◽  
pp. 1697-1706 ◽  
Author(s):  
Mary Jane Knight ◽  
Catherine Leettola ◽  
Mari Gingery ◽  
Hao Li ◽  
James U. Bowie

PLoS ONE ◽  
2017 ◽  
Vol 12 (4) ◽  
pp. e0175355 ◽  
Author(s):  
Tomoki Yagai ◽  
Satoshi Matsui ◽  
Kenichi Harada ◽  
Fuyuki F. Inagaki ◽  
Eiko Saijou ◽  
...  

2007 ◽  
Vol 69 (1) ◽  
pp. 192-198 ◽  
Author(s):  
Tingting Ju ◽  
Michael J. Ragusa ◽  
Jebecka Hudak ◽  
Angus C. Nairn ◽  
Wolfgang Peti

2021 ◽  
Author(s):  
Gwendolyn K. Kirschner ◽  
Serena Rosignoli ◽  
Isaia Vardanega ◽  
Li Guo ◽  
Jafargholi Imani ◽  
...  

AbstractThe root growth angle defines how roots grow towards the gravity vector and is among the most important determinants of root system architecture. It controls water uptake capacity, nutrient use efficiency, stress resilience and as a consequence yield of crop plants. We demonstrated that the egt2 (enhanced gravitropism 2) mutant of barley exhibits steeper root growth of seminal and lateral roots and an auxin independent higher responsiveness to gravity compared to wild type plants. We cloned the EGT2 gene by a combination of bulked segregant analysis and whole genome sequencing. Subsequent validation experiments by an independent CRISPR/Cas9 mutant allele demonstrated that egt2 encodes a STERILE ALPHA MOTIF domain containing protein. In situ hybridization experiments illustrated that EGT2 is expressed from the root cap to the elongation zone. Subcellular localization experiments revealed that EGT2 localizes to the nucleus and cytoplasm. We demonstrated the evolutionary conserved role of EGT2 in root growth angle control between barley and wheat by knocking out the EGT2 orthologs in the A and B genomes of tetraploid durum wheat. By combining laser capture microdissection with RNA-seq, we observed that seven expansin genes were transcriptionally downregulated in the elongation zone. This is consistent with a role of EGT2 in this region of the root where the effect of gravity sensing is executed by differential cell elongation. Our findings suggest that EGT2 is an evolutionary conserved regulator of root growth angle in barley and wheat that could be a valuable target for root-based crop improvement strategies in cereals.Significance StatementTo date the potential of utilizing root traits in plant breeding remains largely untapped. In this study we cloned and characterized the ENHANCED GRAVITROPISM2 (EGT2) gene of barley that encodes a STERILE ALPHA MOTIF domain containing protein. We demonstrated that EGT2 is a key gene of root growth angle regulation in response to gravity which is conserved in barley and wheat and could be a promising target for crop improvement in cereals.


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