The influence of cholesterol on membrane protein structure, function, and dynamics studied by molecular dynamics simulations

Membrane Protein Structure ◽

Effect of Lipid Unsaturation on Membrane Protein Structure and Function from Multi-Microsecond Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2011.11.2725 ◽

2012 ◽

Vol 102 (3) ◽

pp. 498a

Author(s):

Igor Vorobyov ◽

Matthew B. Roark ◽

Scott E. Feller ◽

Toby W. Allen

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Membrane Protein ◽

Structure And Function ◽

Membrane Protein Structure ◽

Protein Structure And Function ◽

Lipid Unsaturation ◽

Dynamics Simulations ◽

And Function

Molecular dynamics simulations and membrane protein structure quality

European Biophysics Journal ◽

10.1007/s00249-007-0225-4 ◽

2007 ◽

Vol 37 (4) ◽

pp. 403-409 ◽

Cited By ~ 25

Author(s):

Anthony Ivetac ◽

Mark S. P. Sansom

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Membrane Protein ◽

Membrane Protein Structure ◽

Structure Quality ◽

3D0936 Prediction of dynamical conformation of biantennary complex-type N-glycan in water by replica-exchange molecular dynamics simulations(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s117_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S117

Author(s):

Suyong Re ◽

Naoyuki Miyashita ◽

Yoshiki Yamaguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Replica Exchange ◽

Complex Type ◽

3D Protein Structure ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

3P042 Applications of the Hamiltonian replica-permutation molecular dynamics simulations to Aβ fragments(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s255_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S255

Author(s):

Satoru G. Itoh ◽

OkumuraHisashi

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Biophysical Society ◽

Faculty Opinions recommendation of Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1088149.542736 ◽

2007 ◽

Author(s):

Bernard Montgomery Pettitt

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure And Dynamics ◽

Dynamics Simulations ◽

Partially Folded States ◽

Protein Structure And Dynamics

Less explored plant lipases: Modeling and molecular dynamics simulations of plant lipases in different solvents and temperatures to understand structure-function relationship

International Journal of Biological Macromolecules ◽

10.1016/j.ijbiomac.2020.08.227 ◽

2020 ◽

Vol 164 ◽

pp. 3546-3558

Author(s):

Sreejanani Sankar ◽

Karthe Ponnuraj

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Structure Function Relationship ◽

Function Relationship ◽

2P158 Molecular Dynamics Simulations of Mechano-Gating in the E-coli Mechanosensitive Channel MscL(34. Membrane protein,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s335_2 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S335

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Membrane Protein ◽

Poster Session ◽

Mechanosensitive Channel ◽

E Coli ◽

Meeting Program ◽

Charge equilibration force fields for molecular dynamics simulations of lipids, bilayers, and integral membrane protein systems

Biochimica et Biophysica Acta (BBA) - Biomembranes ◽

10.1016/j.bbamem.2011.09.016 ◽

2012 ◽

Vol 1818 (2) ◽

pp. 318-329 ◽

Cited By ~ 27

Author(s):

Timothy R. Lucas ◽

Brad A. Bauer ◽

Sandeep Patel

Keyword(s):

Molecular Dynamics ◽

Membrane Protein ◽

Force Fields ◽

Integral Membrane Protein ◽

Charge Equilibration ◽

Protein structure refinement via molecular-dynamics simulations: What works and what does not?

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24871 ◽

2015 ◽

Vol 84 ◽

pp. 282-292 ◽

Cited By ~ 37

Author(s):

Michael Feig ◽

Vahid Mirjalili

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Refinement ◽

Protein Structure Refinement ◽

What Works ◽

All-atom Molecular Dynamics Simulations of a Membrane Protein Stabilizing Polymer

Biophysical Journal ◽

10.1016/j.bpj.2008.12.107 ◽

2009 ◽

Vol 96 (3) ◽

pp. 41a

Author(s):

William J. Drasler ◽

Jonathan N. Sachs

Keyword(s):

Molecular Dynamics ◽

Membrane Protein ◽