scholarly journals Acute ischemic stroke lesion core segmentation in CT perfusion images using fully convolutional neural networks

2019 ◽  
Vol 115 ◽  
pp. 103487 ◽  
Author(s):  
Albert Clèrigues ◽  
Sergi Valverde ◽  
Jose Bernal ◽  
Jordi Freixenet ◽  
Arnau Oliver ◽  
...  
2019 ◽  
Vol 12 (9) ◽  
pp. 848-852 ◽  
Author(s):  
Renan Sales Barros ◽  
Manon L Tolhuisen ◽  
Anna MM Boers ◽  
Ivo Jansen ◽  
Elena Ponomareva ◽  
...  

Background and purposeInfarct volume is a valuable outcome measure in treatment trials of acute ischemic stroke and is strongly associated with functional outcome. Its manual volumetric assessment is, however, too demanding to be implemented in clinical practice.ObjectiveTo assess the value of convolutional neural networks (CNNs) in the automatic segmentation of infarct volume in follow-up CT images in a large population of patients with acute ischemic stroke.Materials and methodsWe included CT images of 1026 patients from a large pooling of patients with acute ischemic stroke. A reference standard for the infarct segmentation was generated by manual delineation. We introduce three CNN models for the segmentation of subtle, intermediate, and severe hypodense lesions. The fully automated infarct segmentation was defined as the combination of the results of these three CNNs. The results of the three-CNNs approach were compared with the results from a single CNN approach and with the reference standard segmentations.ResultsThe median infarct volume was 48 mL (IQR 15–125 mL). Comparison between the volumes of the three-CNNs approach and manually delineated infarct volumes showed excellent agreement, with an intraclass correlation coefficient (ICC) of 0.88. Even better agreement was found for severe and intermediate hypodense infarcts, with ICCs of 0.98 and 0.93, respectively. Although the number of patients used for training in the single CNN approach was much larger, the accuracy of the three-CNNs approach strongly outperformed the single CNN approach, which had an ICC of 0.34.ConclusionConvolutional neural networks are valuable and accurate in the quantitative assessment of infarct volumes, for both subtle and severe hypodense infarcts in follow-up CT images. Our proposed three-CNNs approach strongly outperforms a more straightforward single CNN approach.


Stroke ◽  
2017 ◽  
Vol 48 (suppl_1) ◽  
Author(s):  
Steve O’Donnell ◽  
Alex Linn ◽  
Jennifer Majersik ◽  
Haimei Wang ◽  
Lee Chung ◽  
...  

Introduction: The Alberta Stroke Program Early CT Score (ASPECTS) is a validated tool measuring early ischemic changes on noncontrast CT (NCCT). We hypothesized an ASPECTS using CT angiography-source images (CTA-SI) would be superior to NCCT for predicting lesion core in patients with acute ischemic stroke (AIS). Methods: We included AIS patients from 2010-2014 with M1 middle cerebral artery (MCA) occlusion, NCCT, CTA-SI, and CT perfusion (CTP). Two raters through consensus assigned an ASPECTS to both NCCT and CTA-SI. CTP lesion core was independently determined with the Olea Sphere, OsiriX, and Siemens syngo.via software. MRI lesion core (diffusion weighted imaging (DWI) MRI lesion within 3 days of stroke onset) was measured with the Olea Sphere software. Statistical comparisons between continuous and ordinal variables were performed with Spearman’s rank correlation coefficient and between continuous variable with linear regression. Results: We included 61 patients in the final analysis, of which 24 also had MRI. The mean±SD age was 61±18 years and 61% were male. Mean NIH Stroke Scale at admission was 14.1±8.0 and median (IQR) follow-up modified Rankin Scale was 3 (1,6). The CTA-SI ASPECTS had superior correlation with lesion volume on all 3 software platforms compared to the NCCT ASPECTS; CTA-SI ASPECTS showed a significant correlation with MRI lesion core volume while NCCT ASPECTS did not (see Table 1). Discussion: CTA-SI likely shows regions with less cerebral blood flow that might not yet be hypodense on NCCT. Our results suggest that in patients with AIS and proximal MCA occlusion CTA-SI ASPECTS better predicts lesion core volume, itself an independent predictor of clinical outcome, defined on both CTP and MRI DWI compared with NCCT ASPECTS.


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