Genome-wide characterization of Toll-like receptors in black rockfish Sebastes schlegelii: Evolution and response mechanisms following Edwardsiella tarda infection

2020 ◽  
Vol 164 ◽  
pp. 949-962
Author(s):  
Min Cao ◽  
Xu Yan ◽  
Ning Yang ◽  
Qiang Fu ◽  
Ting Xue ◽  
...  
Keyword(s):  
Edwardsiella Tarda ◽  
Toll Like Receptors ◽  
Black Rockfish ◽  
Genome Wide ◽  
Sebastes Schlegelii

Identification and characterization of cystatin B from black rockfish, Sebastes schlegelii, indicating its potent immunological importance

2020 ◽  
Vol 104 ◽  
pp. 497-505
Author(s):  
P.D.S.U. Wickramasinghe ◽  
Hyukjae Kwon ◽  
Don Anushka Sandaruwan Elvitigala ◽  
Qiang Wan ◽  
Jehee Lee
Keyword(s):  
Black Rockfish ◽  
Cystatin B ◽  
Sebastes Schlegelii ◽  
Identification And Characterization

scholarly journals Isolation And Characterization Of 38 SNP Markers For The Black Rockfish, Sebastes Schlegelii By Next-Generation Sequencing

2021 ◽  
Author(s):  
Xianggang Gao ◽  
Xiangbo Bao ◽  
Wei Sun ◽  
Yunfeng Li ◽  
Zongying Liu ◽  
...  
Keyword(s):  
Polymorphic Information Content ◽  
Snp Markers ◽  
Habitat Destruction ◽  
Single Nucleotide ◽  
Genetic Studies ◽  
Important Species ◽  
Black Rockfish ◽  
Isolation And Characterization ◽  
Sebastes Schlegelii

Abstract The black rockfish (Sebastes schlegelii) is an economically important species. However, wild S. schlegelii resources have declined sharply in recent years as a result of human disturbance and habitat destruction. Thus, it is crucial to protect the current resources of S. schlegelii. In this study, 38 novel single nucleotide polymorphism (SNP) markers were developed based on restriction-site associated DNA sequencing. The results showed that the observed heterozygosity and expected heterozygosity ranged from 0.1400 to 0.6400 and 0.1487 to 0.4978, respectively. The minor allele frequency raged from 0.1429 to 0.4694. Polymorphic information content ranged from 0.174 to 0.365. Four SNPs were found to be deviated significantly from the HWE (P<0.05). These SNP markers will serve as a useful tool for genetic studies and population evaluation aimed at the conservation of S. schlegelii.

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