DNA base sequence specificity through partial intercalation: DFT-D based energy analysis of molecular dynamics snapshots

2020 ◽  
Vol 101 ◽  
pp. 107722
Author(s):  
Soumi Das ◽  
Siddhartha Roy ◽  
Dhananjay Bhattacharyya
Keyword(s):  
Molecular Dynamics ◽  
Energy Analysis ◽  
Base Sequence ◽  
Sequence Specificity ◽  
Dna Base

scholarly journals Molecular Dynamics Investigations on Base Sequence Specificity of Counterion Binding to DNA

2012 ◽  
Vol 102 (3) ◽  
pp. 637a
Author(s):  
Alessio Atzori ◽  
Sonia Liggi ◽  
Aatto Laaksonen ◽  
Alexander Lyubartsev ◽  
Giuseppe Saba ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Base Sequence ◽  
Sequence Specificity ◽  
Counterion Binding

Molecular dynamics simulations and binding free energy analysis of DNA minor groove complexes of curcumin

2011 ◽  
Vol 17 (11) ◽  
pp. 2805-2816 ◽  
Author(s):  
Mathew Varghese Koonammackal ◽  
Unnikrishnan Viswambharan Nair Nellipparambil ◽  
Chellappanpillai Sudarsanakumar
Keyword(s):  
Molecular Dynamics ◽  
Free Energy ◽  
Molecular Dynamics Simulations ◽  
Energy Analysis ◽  
Binding Free Energy ◽  
Minor Groove ◽  
Dna Minor Groove ◽  
Dynamics Simulations ◽  
Free Energy Analysis

Physical mapping of DNA base sequence homologies between an octopine and a nopaline Ti plasmid of Agrobacterium tumefaciens

1981 ◽  
Vol 152 (2) ◽  
pp. 183-208 ◽  
Author(s):  
G. Engler ◽  
A. Depicker ◽  
R. Maenhaut ◽  
R. Villarroel ◽  
M. Van Montagu ◽  
...  
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Physical Mapping ◽  
Ti Plasmid ◽  
Base Sequence ◽  
Dna Base ◽  
Sequence Homologies
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