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Functional Dynamics of Proteins Elucidated by Statistical Analysis of Simulation Data

2012 ◽  
Vol 2 (4) ◽  
pp. 443-451
Author(s):  
Burak Alakent ◽  
Zeynep Kurkcuoglu ◽  
Pemra Doruker
Keyword(s):  
Statistical Analysis ◽  
Simulation Data ◽  
Functional Dynamics

Recent Applications of Replica-Exchange Molecular Dynamics Simulations of Biomolecules

2012 ◽  
Vol 2 (4) ◽  
pp. 401-412 ◽  
Author(s):  
Yuji Sugita ◽  
Naoyuki Miyashita ◽  
Pai-Chi Li ◽  
Takao Yoda ◽  
Yuko Okamoto
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Replica Exchange ◽  
Replica Exchange Molecular Dynamics ◽  
Dynamics Simulations

Exploring Protein-Protein and Protein-Ligand Interactions in the Immune System using Molecular Dynamics and Continuum Electrostatics

2012 ◽  
Vol 2 (4) ◽  
pp. 324-343 ◽  
Author(s):  
Chris A. Kieslich ◽  
Phanourios Tamamis ◽  
Ronald D. Gorham Jr. ◽  
Aliana Lopez de Victoria ◽  
Noriko U. Sausman ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Immune System ◽  
Continuum Electrostatics ◽  
Protein Ligand Interactions ◽  
Ligand Interactions
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