scholarly journals Ω-Net (Omega-Net): Fully automatic, multi-view cardiac MR detection, orientation, and segmentation with deep neural networks

2018 ◽  
Vol 48 ◽  
pp. 95-106 ◽  
Author(s):  
Davis M. Vigneault ◽  
Weidi Xie ◽  
Carolyn Y. Ho ◽  
David A. Bluemke ◽  
J. Alison Noble
2021 ◽  
Author(s):  
Andreas M Kist ◽  
Stephan Duerr ◽  
Anne Schuetzenberger ◽  
Marion Semmler

Glottis segmentation is a crucial step to quantify endoscopic footage in laryngeal high-speed videoendoscopy. Recent advances in using deep neural networks for glottis segmentation allow a fully automatic workflow. However, exact knowledge of integral parts of these segmentation deep neural networks remains unknown. Here, we show using systematic ablations that a single latent channel as bottleneck layer is sufficient for glottal area segmentation. We further show that the latent space is an abstraction of the glottal area segmentation relying on three spatially defined pixel subtypes. We provide evidence that the latent space is highly correlated with the glottal area waveform, can be encoded with four bits, and decoded using lean decoders while maintaining a high reconstruction accuracy. Our findings suggest that glottis segmentation is a task that can be highly optimized to gain very efficient and clinical applicable deep neural networks. In future, we believe that online deep learning-assisted monitoring is a game changer in laryngeal examinations.


Author(s):  
Abraham George Smith ◽  
Eusun Han ◽  
Jens Petersen ◽  
Niels Alvin Faircloth Olsen ◽  
Christian Giese ◽  
...  

We present RootPainter, a GUI-based software tool for the rapid training of deep neural networks for use in biological image analysis. RootPainter facilitates both fully-automatic and semi-automatic image segmentation. We investigate the effectiveness of RootPainter using three plant image datasets, evaluating its potential for root length extraction from chicory roots in soil, biopore counting and root nodule counting from scanned roots. We also use RootPainter to compare dense annotations to corrective ones which are added during the training based on the weaknesses of the current model.


Author(s):  
Alex Hernández-García ◽  
Johannes Mehrer ◽  
Nikolaus Kriegeskorte ◽  
Peter König ◽  
Tim C. Kietzmann

2018 ◽  
Author(s):  
Chi Zhang ◽  
Xiaohan Duan ◽  
Ruyuan Zhang ◽  
Li Tong

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